Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02732 ATGACATCTAGTAATCCTTTCTTTGATGATATACGGAGCAGACCTGGGGTTGATCCTCCTCAAACTGAAGAGTCAACAGAAATTCCTGAACTCGTAAATGATCCTATACAGACTGTTGTTAAACCTAATGGGACTGTTTCCAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCTATGTACCCTCCAATCCACCAGTGCTCAAATGGTCACACTCTATGCTCTGGTTGCAAACCAAGAGTCCATGACCGGTGCCCTACTTGTCGGCATGAGCTCGGCAATATTAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATAGGCATATACCCGTATTACAGCAAGCTAAAACATGAGTCTCAATGTGTGTTTAGACCCTACAACTGTCCATATGCTGGCTCAGAATGTGCTGTCGTCGGTGATGTACAGTTCTTGGTGGATCATCTGAAAGATGATCACAAAGTTGACATGCATAGTGGCTGCACTTTTAATCATCGCTATGTCAAATCAAATCCACAGGAAGTTGAAAATGCCACGTGGATGTTAACGGTTTTTAGTTGCTTCGGTCAGTATTTTTGCCTGCATTTTGAAGCTTTTCAACTGGGAATGGCTCCTGTCTACATAGCATTTTTGCGGTTTATGGGCGATGATGATCAGGCAAAGAACTATACCTACAGTCTTGAGGTAGGTGGAAATGGGAGGAAGATGACATGGCAAGGAGTGCCTAGAAGCATTAGGGAAAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCTCTCTTCTTTTCCGGGGGTGATAGGAAGGAATTGAAGCTACGAGTTACCGGAAGGATCTGGAAAGAGCAGTGA 915 0.4459 MTSSNPFFDDIRSRPGVDPPQTEESTEIPELVNDPIQTVVKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCVFRPYNCPYAGSECAVVGDVQFLVDHLKDDHKVDMHSGCTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDQAKNYTYSLEVGGNGRKMTWQGVPRSIRESHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02732 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 297 IPR008974 GO:0005515
Mepo5g02732 304 SUPERFAMILY RING/U-box 48 96 - -
Mepo5g02732 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 43 303 - -
Mepo5g02732 304 MobiDBLite consensus disorder prediction 1 27 - -
Mepo5g02732 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Mepo5g02732 304 SUPERFAMILY TRAF domain-like 109 301 - -
Mepo5g02732 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 160 IPR013083 -
Mepo5g02732 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Mepo5g02732 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Mepo5g02732 304 CDD RING-HC_SIAHs 54 92 - -
Mepo5g02732 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 107 IPR013083 -
Mepo5g02732 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Mepo5g02732 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Mepo5g02732 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo5g02732 304 CDD Sina 170 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02732 Mepo-Chr5 33182704 33186761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02732 47 304 C3H Transcription Factor Family AT2G41980 78.295 4.10e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02732 K04506 - gmx:100781022 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g02732 5 33182704 33186761 Mepo5g02732 5 33182704 33186761 ECH
Mepo5g02732 5 33182704 33186761 Mepo1g03494 1 40524486 40525769 PCT