Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02724 ATGTCCACCGCAAACCACAAACTCTGTGGTTTTCTCTCAACCGTTCTCACACTAACCCCTCCGAATCAAAACGACACGCGTTTTAACGACCGATGTGAATTCTTCAACGATAACAACACCGTCGCGTTTCGGACTCAAAACGGTGTCGTTTTGAATCCAATTATCAATTCAACGCAATGCGGCGAGAGTTCGAGTGCGAAGAAGGTGAAGAAGGTTGGGATGGTGAATGGGAGTTTCAGTGTTGTGAATCAGCTTCATGCGTTGGTTTTGAGGAAATGTTTGGATATTGATGTTCGTGTTTTGTGTGTTGTCGAGGTTGATTCTAGGGTTAGGGTTGTTGTGATTGTTGATGTTTATCTTCCGGTTTTGGTTTGGAGTAGTGGTTGGCAGTTTCCGAAATCTGGTTCTGTTGCTGGTGCTGTTTTTCGACATTTGAGCTGTGATTGGAATGCGAGAAGTTCAATGCTTTCTGATCCAGACTACTGTAGAAAGATACATGGAGAAAATGAGAGCATCTGGAATCTTTCTGATTGTCATGTGCTTGGTTGCAAACTCCATTCCCCTGTGAGCGGTTCTTCAAGGGAAAGGCTTTTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTGTAGGAAATCAGCATAACTTTATTATTTCCAAGATAATACCTATGGACAACACTGGCAGATCTGGGATTTGGGATATCTCTGATGATATTTTAATTAAAATTCTATATTCCCTGGGCCCACTGGACCTCACTAGGGTTTCTGCAACATGTCATCATCTAAGATCCTTGGCTGTTTCAGTAATTCCTTGCACAAAGTTAAATCTATTTCCTCATCAGCAGGCAGCAGTTGAATGGATGTTGCAACGTGAACGAAATGCTGAACTTATGCCACATCCTTTATATGTAGCTCTATCAACTGATGATGGCTTTAGTTTCCACGTAAATACCGTAACTGGTGATATAGTCATCGGGGAAACTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACAAAGACACAAGGTACAATGGCGGATCCACCAGATGGGTCACCAGTAGTCTGGTGTCAACATAACACTAACAAAAAATGTGGCTATTATGAGATCAGTGGTAATAACATGACTGGTGGTTATACTATCATGGGTAAGAGGGATGTGTGCCAAGATTCAGGTAGAAGTAATGAGAACCATGATTTCTCCTCCGAAAGAGCCAAATTGTTAAATCCTGATCAGAAAATCACTAAACCTCATGATTCATGTTCTGTAGGAGAAGACACATCACCTCCTGATGCTTGCTCTGAGGAATATTCTCTTGCTAGTCGGTGCACTAGAAGCTTGAGTCGCGTCAAGAAATATTTATATTTCACGTATGACGAGGAAGCTATGATTTCCAACGATAAAAGAGCTGGCAAAAGACCAATTAAAACAAAACATGCATCAGATGTTGCATCCCATGTGTCTCAAAACAAGCTTGTTGATACTTCATATGGTTCTGAACAGAGTTACAAGTGGCATGGGAAGCGTAAAGTTGATTGTTTGGAGTACAGTGATACGTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAGCTTGCGGATAACAGTATGGCTAATTCTAATGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTGTATCAGAGTTGTAGAGTTCCAGAACAGTCTTTTAAGAACAGCTCTAAGATAACTTACTTACCAGGATTTCACTTGAAAGGAACTCCTGGTGGTGAGAAACAAAACGTTTCATTTTTCACTAGTGTGCTTAAGGAGCACTACTCATTGGTAAATTCTCGGACAAAGGAGGCTCTGACTTGGTTGGCCAAAATTTCTATTGACAAGCTTGCAGAAATGGAAACAAATGGAATACGGAGTCCTATTTTAAACAACTGCACTTTGTCTAACGGGACTGTGAATCCATACCATAAAGTATTTCAAGCATTTGGCCTCAAAAAGAAAGTAGAGAAAGGTGTATACAGGTGGTTCTACCCAAAAAATCTAAAAAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCTGTGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAAAGCAACCCTGGTAGTTGTTCCAGCAAATTTGGTCGATCATTGGAAAGCACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCAGGTTTATGTTTGGAACGATCATCGGAAACCATCTGCGCACTCGCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGCCGTTTGAGTGCGGAGTGGGGCCCACGTAAGAAGAGTGCTCTAATGCAAGTGCACTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTGCAAATGACTATTTCATTGGTTGCTTCAAATCGGTGGATACTAACTGGAACTCCAACACCGAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAACCAAAAATCATGGGATGCTGGCGTGCTTAGGCCATTCGAGGCAGAGATGGAAGAAGGTCGGTCTCGTCTGTTGAATTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGCAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTACTAGATTTTAATGAGGAACATGCTAGAAGTTACAATGAGTTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCGCATGTGGAAAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGGAGCTATAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACACGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTGAAAAATGGTCTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTCCTGTTTGGTGGCCACTGTGTCAGGTGCAAGGCATGGTGCCGACTCCCTCTCATTACGCCATGTCGACATATGTTGTGCCTTGATTGTGTTTCCATTGACAAGACAAAGTGTACATATCCTGGCTGTGATAACTTGTATGAGATGCAGAGTCCTGATTCAATGGCACGGCCTGAAAATCCTAACCCAAAGTGGTCTGTACCCCAAGATCTTATTGAGTTACAACCTTCTTATGCGCAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTGCATATCTCGTCCAGAGGTTGAAAGCTTTGCAGGGAACCAATGAAGAGATGAGTTCATATACTGACAATAGCAATGCGATGTATATTGAAAATAGTTTTCCTTTGCACACAAGTCATTCCGCATCATCATTCCAGGAATGTTCAAGTAGCATTAGTACCAATGTGGTCCCCGAAAAAGTTTTGATATTTACTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTGTTAATAGTATCAAATATACTGGAATGTATAACCCAATGCATTCTAGCAACAAGAAGAAGTCATTAGCCAAGTTCCAGCACGATTCGAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTAAGTTTTGTTACACATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGTATGGGTGCTTCCCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACTATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGACAAACGTAGAAGATTTCATAATAAAGATGTTGTCAAATCTGAAGATGGTGGGGGACGAGGGTGTCGATCAGTGCATGATTTTGCTGAAAGCAATTATCTACTGGAACTTAAATTTGTATAA 3969 0.4117 MSTANHKLCGFLSTVLTLTPPNQNDTRFNDRCEFFNDNNTVAFRTQNGVVLNPIINSTQCGESSSAKKVKKVGMVNGSFSVVNQLHALVLRKCLDIDVRVLCVVEVDSRVRVVVIVDVYLPVLVWSSGWQFPKSGSVAGAVFRHLSCDWNARSSMLSDPDYCRKIHGENESIWNLSDCHVLGCKLHSPVSGSSRERLFELHEIFKTVPSPCVGNQHNFIISKIIPMDNTGRSGIWDISDDILIKILYSLGPLDLTRVSATCHHLRSLAVSVIPCTKLNLFPHQQAAVEWMLQRERNAELMPHPLYVALSTDDGFSFHVNTVTGDIVIGETPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTMADPPDGSPVVWCQHNTNKKCGYYEISGNNMTGGYTIMGKRDVCQDSGRSNENHDFSSERAKLLNPDQKITKPHDSCSVGEDTSPPDACSEEYSLASRCTRSLSRVKKYLYFTYDEEAMISNDKRAGKRPIKTKHASDVASHVSQNKLVDTSYGSEQSYKWHGKRKVDCLEYSDTWIQCDACHKWRKLADNSMANSNAAWFCSMNTDPLYQSCRVPEQSFKNSSKITYLPGFHLKGTPGGEKQNVSFFTSVLKEHYSLVNSRTKEALTWLAKISIDKLAEMETNGIRSPILNNCTLSNGTVNPYHKVFQAFGLKKKVEKGVYRWFYPKNLKNLTFDVAALGMALCEPLDLVRLYLSKATLVVVPANLVDHWKAQIEKHVRPGQLQVYVWNDHRKPSAHSLAWDYDVVITTFSRLSAEWGPRKKSALMQVHWFRIILDEGHTLGSSLSLTNKLQMTISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLNLLQKCMISARKADLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSGAIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVKNGLDSTSGEYTSIRYSLLFGGHCVRCKAWCRLPLITPCRHMLCLDCVSIDKTKCTYPGCDNLYEMQSPDSMARPENPNPKWSVPQDLIELQPSYAQDNWDPDWQSTSSSKVAYLVQRLKALQGTNEEMSSYTDNSNAMYIENSFPLHTSHSASSFQECSSSISTNVVPEKVLIFTQFLEHIHVIEQQLAVNSIKYTGMYNPMHSSNKKKSLAKFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKRRRFHNKDVVKSEDGGGRGCRSVHDFAESNYLLELKFV 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02724 1322 Pfam SNF2-related domain 282 949 IPR000330 GO:0005524|GO:0140658
Mepo5g02724 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 1281 IPR027417 -
Mepo5g02724 1322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1152 1294 IPR001650 -
Mepo5g02724 1322 ProSitePatterns Zinc finger RING-type signature. 1029 1038 IPR017907 -
Mepo5g02724 1322 Pfam CW-type Zinc Finger 538 581 IPR011124 GO:0008270
Mepo5g02724 1322 CDD F-box_SF 236 268 - -
Mepo5g02724 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 891 IPR027417 -
Mepo5g02724 1322 Gene3D - 534 587 - -
Mepo5g02724 1322 CDD DEXDc_SHPRH-like 710 892 - -
Mepo5g02724 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 360 IPR027417 -
Mepo5g02724 1322 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 78 1284 - -
Mepo5g02724 1322 SUPERFAMILY F-box domain 227 270 IPR036047 GO:0005515
Mepo5g02724 1322 Gene3D - 1059 1311 IPR027417 -
Mepo5g02724 1322 SMART helicmild6 1173 1255 IPR001650 -
Mepo5g02724 1322 Gene3D - 702 895 IPR038718 -
Mepo5g02724 1322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 686 851 IPR014001 -
Mepo5g02724 1322 MobiDBLite consensus disorder prediction 409 432 - -
Mepo5g02724 1322 SMART ultradead3 275 862 IPR014001 -
Mepo5g02724 1322 MobiDBLite consensus disorder prediction 409 452 - -
Mepo5g02724 1322 CDD SF2_C_SNF 1160 1265 - -
Mepo5g02724 1322 Pfam Helicase conserved C-terminal domain 1152 1255 IPR001650 -
Mepo5g02724 1322 ProSiteProfiles Zinc finger CW-type profile. 533 584 IPR011124 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02724 279 357 RAD5 or RAD16-like Gene Family AT5G22750 37.209 2.40e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo5g02724 SNF2_N 2.8e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02724 - - gmx:100803102 2036.15