Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02674 ATGGAAGAATCAATCCAAAGCGATGAAATCCCAAAATTCAGAGATATTAGACGCTATTACTGCCAATTCTGCGGTATCTGTAGATCCAAAAAAACCCTAATTACCTCACACATCAATTCTGAACACAAGGAGGAGGTGGAGAAAGCAAGAGTTGAAACTGAACCTGAATTAGAGGGTGGTTTGAAAGCTAATACTTGCGAGGAATGTGGTGCTAGTTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGTCATTCCCTTGAGAGGCCATTTGTATGTAGCCTTGAAGATTGCAAGGCAAGCTACAGAAGAAAGGATCATTTGAATCGTCACCTTCTACAGCATCAAGGGAAGACTTTTAAATGTCCTATCGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATTTGAAAAGACACGTTGAAGAGATGCATGATGAGAATTCTACCCCTCCTTGTAGTGGTGAAAATCAGAAGCAGTTTGTATGTCCGGAGATTGGCTGTGGAAAGGTTTTCAGATATGCATCACAACTACAGAAGCATGAAGATTCTCATGTTAGGCTTGAAACAATTGAAGTGTTGTGCTTAGAGCCAGGTTGCATGAAATTTTTCACTAATTCCGAGTGCCTTAAAGCTCATGTTAAATCCTGCCATCAATATGTGACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAATATGAAGAGGCATCTGCGAACACACGAAGCCAGCAATTCTTCCGAAGCATTTAAATGTGAATTTGAGGGTTGTGACAGCATGTTCTCAACTAAATCTAATCTTCATAAGCATGAAAAGGCCGTACACTTTCAAGTAAAGCCGTTTGCGTGTGGGTTTCCTAATTGTGGGATGAGGTTTGCTTACAAACACGTGAGAGATAATCATGAAAAGACTGCAAAACATGTTTTTGCCCTTGGTGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTCCCACAGTAGAAATGTTGGTTAGGAAGAGAGTTACCCCACCTAGTCAATTAGAGAACTTGTTATTTGTGCAGGATTGTCAGTAA 1092 0.4057 MEESIQSDEIPKFRDIRRYYCQFCGICRSKKTLITSHINSEHKEEVEKARVETEPELEGGLKANTCEECGASFKKHAYLLQHMQSHSLERPFVCSLEDCKASYRRKDHLNRHLLQHQGKTFKCPIENCKSGFSLQSNLKRHVEEMHDENSTPPCSGENQKQFVCPEIGCGKVFRYASQLQKHEDSHVRLETIEVLCLEPGCMKFFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHEASNSSEAFKCEFEGCDSMFSTKSNLHKHEKAVHFQVKPFACGFPNCGMRFAYKHVRDNHEKTAKHVFALGDFEEADEEFRSRPRGGVKRKCPPTVEMLVRKRVTPPSQLENLLFVQDCQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02674 363 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Mepo5g02674 363 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Mepo5g02674 363 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Mepo5g02674 363 Pfam Zinc finger, C2H2 type 252 277 IPR013087 -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Mepo5g02674 363 Gene3D Classic Zinc Finger 92 117 - -
Mepo5g02674 363 Gene3D Classic Zinc Finger 118 157 - -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Mepo5g02674 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Mepo5g02674 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Mepo5g02674 363 PANTHER ZINC FINGER PROTEIN 8 355 - -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Mepo5g02674 363 Gene3D Classic Zinc Finger 245 323 - -
Mepo5g02674 363 SUPERFAMILY beta-beta-alpha zinc fingers 102 155 IPR036236 -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Mepo5g02674 363 SUPERFAMILY beta-beta-alpha zinc fingers 233 291 IPR036236 -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Mepo5g02674 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Mepo5g02674 363 SUPERFAMILY beta-beta-alpha zinc fingers 158 188 IPR036236 -
Mepo5g02674 363 Gene3D Classic Zinc Finger 158 223 - -
Mepo5g02674 363 FunFam Zinc finger 45-like 60 87 - -
Mepo5g02674 363 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Mepo5g02674 363 SUPERFAMILY beta-beta-alpha zinc fingers 63 116 IPR036236 -
Mepo5g02674 363 SMART c2h2final6 19 42 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 121 146 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 64 86 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 222 243 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 194 219 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 283 309 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 162 186 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 252 277 IPR013087 -
Mepo5g02674 363 SMART c2h2final6 92 116 IPR013087 -
Mepo5g02674 363 Gene3D Classic Zinc Finger 7 91 - -
Mepo5g02674 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Mepo5g02674 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02674 Mepo-Chr5 32413801 32416601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02674 88 312 C2H2 Transcription Factor Family AT1G72050 51.449 3.07e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g02674 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02674 K09191 - gmx:100801812 596.275