Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02673 ATGGCGGATGTAATGCTCATGAAAGAAATTGAAGACAAAGCTTTGCTTCTCGGTATCGATCTATCCTCTATCGATCTCGATTCCATTCACCTCCCTCCAGGTGACAACTGCGGAATCCCCAGTGACGACGATGATGTTATTCAAGAGGAGAATCTGGAGTTTGATTCTGGATTTGGCAATATTATTGTAGTGGATAATCTACCCGTTGTTCCCAAGGAGAAATTTGATAAGCTTGTAACCGTTGTTAGAAAAATTTATAGTCAGATTGGTGCTATCAAAGAGGATGGTCTCTGGATGCCTGTTGATCCTGCTACTGAAAAGTCCTTGGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCAAGGATACAAACTCGATCGTTCCCATATATTTTCTGTGAGTATGTTTGATGATTTTGATCGGTTCATGAAAGTTCCAGACGAATGGGCTCCTCCTCCAAACCAGGAATATGCTCCAGGGGAAAATCTGCAACAATGGCTTACTGATGCTAAAGCACGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCTAAGCTTTTAAAGCCCGACCCTGTTTATAAACGTGCTTTTTGGACGGAGAGTTTTGTACAATGGTCACCGTTGGGTACTTACTTGGCAACAGTTCACCGTCAGGGGGCAGCAGTTTGGGGAGGTGCTACCACCTTCAATCGTCTCATGCGTTACGCTCATCCTCAGGTTAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTACAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTTGTGATAAACATATTTGATGTGAGGACTGGTAAAGTTATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCTATTGGAGGCACTGGGGGTGTCACTGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAGTACTTTGCAAGGATAGGAAAAAATGTACTTTCTGTATATGAGACAGAAACATTTTCTCTCGTTGACAAAAAATCTTTGAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCCATCATTTCACTGTTTGTTCCTGAGACAGGAGGTGGTAACCAGCCTGCTAGGGTAAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGCTTCTTTTTAATGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGAGAATACCTTGCTGTTAATGTTGATCGATATACCAAAACAAAGAAAAGCACATTCACAGGCTTTGAGCTTTTCCGTATAAAGGAGCGTGACATTCCTATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAAATCATTGCATTTGCTTGGGAGCCAAAGGGACATAGATTTGCTGTTATTCATGGTGATAACCCTAAGCCTGATATTAGTATCTACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCAGCAGGTCGCTTCATTGTACTAGCAGGATTGAAAGGTTTCAATGGACTGTTGGAATTTTACAATGTCGACGAGCTTGAAACCATGGCTAATACTGAACATTTTTATGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGCAAACATCTTTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCCAGACCAGCCTCTTTCTTGACTGCTGAGAAGGAGGAGGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGACCAAGATGTTTCATTGCTGCTGAGTGAGCAAGAGCGTGAGAAGCGTAGGATCTTGAAAGAAGATTGGGACAAGTGGGCCAATGAATGGAAGCTGTTGCATGAAGAAGAGAAGCTAGAGAGGGAAAATCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAGGAATATGAAGCAAAGGACATTGAAGTCGAGGAAATAGTCGATATTACCAAAGAGATCCTTCAAGTTGAGGAGTATTAG 2154 0.4201 MADVMLMKEIEDKALLLGIDLSSIDLDSIHLPPGDNCGIPSDDDDVIQEENLEFDSGFGNIIVVDNLPVVPKEKFDKLVTVVRKIYSQIGAIKEDGLWMPVDPATEKSLGYCFIEYNTPQEAELAKEKTQGYKLDRSHIFSVSMFDDFDRFMKVPDEWAPPPNQEYAPGENLQQWLTDAKARDQFVIRAGSDTEVLWNDAKLLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGRDDKYFARIGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPETGGGNQPARVSLVQIPSKEELRQKLLFNVSDCKMYWQSNGEYLAVNVDRYTKTKKSTFTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMANTEHFYATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPASFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRILKEDWDKWANEWKLLHEEEKLERENLRDGEASDEEEEYEAKDIEVEEIVDITKEILQVEEY 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02673 717 PIRSF Transl_init_eIF3b 8 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mepo5g02673 717 Gene3D - 415 623 IPR015943 GO:0005515
Mepo5g02673 717 Gene3D - 195 380 IPR015943 GO:0005515
Mepo5g02673 717 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Mepo5g02673 717 Gene3D - 55 154 IPR012677 -
Mepo5g02673 717 CDD RRM_eIF3B 59 143 IPR034363 -
Mepo5g02673 717 SUPERFAMILY DPP6 N-terminal domain-like 218 599 - -
Mepo5g02673 717 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mepo5g02673 717 SUPERFAMILY RNA-binding domain, RBD 58 145 IPR035979 GO:0003676
Mepo5g02673 717 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Mepo5g02673 717 Coils Coil 618 638 - -
Mepo5g02673 717 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Mepo5g02673 717 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Mepo5g02673 717 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Mepo5g02673 717 SMART rrm1_1 61 143 IPR000504 GO:0003723
Mepo5g02673 717 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 137 IPR000504 GO:0003723
Mepo5g02673 717 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 28 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02673 Mepo-Chr5 32407412 32411163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02673 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 75.775 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02673 K03253 - gmx:100817394 1316.6