Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02668 ATGAAGAAAACCTTTCCCACCGCCAACCACCGCACCACCACCCGGCATGACTCTTATCTCCGCCGCCAACCACTGTGGCCAGCTGACCATCACCGGAACCCCAGATTCCACTCCAACCACCTCCATGATCGCCCCCGCTTCCCCAATTTCATCGTCAATCTCCGCCTCACCCACCGCCGTAACCTCCGCCGTGAAGAGATCGAAACCCTGATCGCCGATTGCAATCCAAATCCTGAAAAATTCTCATTTCCACCAAACGAAAGCATCGCTGCTTCTCTCAATTTCAACAACCGAACAGACGCAATCAGCGCCGTCGTTTGGTTCTGGGAATCACGTTTATCAGAATGCCGTCACGATTTATCGCCGGAGTTCATCGAGATGAACTCCGGCAATCCCAAACACGGAGACGAACTCAACTTTCGTCTCCGAAGCGTATTCATGAGCCATGTGAAGGAATTAATGGAAGGAAAAGAAATAAACCGTTGGATAAATGAATGGGATCGTATATCAAAAGAGATTAAACAAGTAAATAGCTTATTAAGTAAACCTTTTCCAATTAGGGTTCAAGATGAGAATCTTGATAGGAAAAAAATGCTTGATGGTGAACAAAATTTGGTTGAGAAAAGATTAAAGGAATTTGAATATGCTATGGAGAATATTTTGATGTATTTAGAGGAAAATAATAATAATGATGATGATGTTAATGTGATTAAGTTTGGTGAAAGATTTGATTGGGAGAAGATTTGTAATTTTATTGTTAGGGAAAGGAGGAGACTTGAAGAAGGTTTGCCTATTTATGCATATAGGAAGGAAATTCTTCAGCAAATATATCATCAACAGATAACAGTGTTGATTGGAGAGACAGGTTCTGGGAAGAGTACTCAGTTAGTGCAGTTTCTTGCTGATTCGGGTGTTGGGGCCAATGAGTCAATTGTGTGCACTCAGCCTCGCAGGATAGCTGCAAAATCATTGGCTGAAAGGGTCCGGGAAGAAAGTGGTGGATGTTATGAAGACAGTTCAATCAAGTGTTATTCTTCGTTTTCTTCTTGGAACAAGTTCGATTCTAGGATAACCTTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAAGAATTTGTCTGGGATTTCGTGTATTATAGTGGATGAGGCTCATGAAAGGAGTATAAATACTGATTTATTGTTGGCGTTGATAAAGAATTTACTTCGTAAGAGGGTTGAAATGCGGCTTATTATCATGTCTGCCACAGCTGATGCAAAGCAGCTATCTGATTACTTCTATGGCTGTGGAATTTTTCGTGTTCCAGGGAGAAACTTCCCTGTGGAGGTGAGATATGTTCCTTCCAATTATGAAGGAGGATCTCGTTCTTCTGTTGTGGACACTTACGTTTCCGATGTTGTTAAAATGGCAACTGAAATTCATAGAACAGAGAAAGAGAAAGAAGGAACTATTCTTGCCTTTCTTACATCACAGTTAGATGTAGAATGGGCTTGTGAAAAGTTTGAAGTCCCCTCTGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCAAATTTTCAAGAACTATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATGTCGCTGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGTTTTGATCCAAGCAGTGGGATGAGTGTACTTAAGATTTGCTGGATCAGCCAGAGTTCTGCTAACCAACGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGTAGGTGCTATAGACTGTACTCAGAAGCTGATTATCAGTCTATGGAACCAAATCAAGATCCCGAGATTCGAAGAGTTCATCTTGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTCCAGGATTTCGATTTTGTGGATGCTCCATGCACTAGCTCTATTGAGAGGGCAATCGGGAATCTAATTCAATTAGGAGCCATTAAACTCAACAATGATGTTCATGAATTAACTCCTGAAGGTAGGCGCTTAGCAAGAATGGAGATTGAACCTAGGCTTGGTAAACTCATTCTTAGCTGTTTCCAATATACCTTGGGTAGGGAAGGCATTGCCCTTGCTGCCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGATAAGCAAAAATCTGATTGTCAGAAAGTGCAATTTTGCCATTGTGACGGTGACCTTTTTACTCTTCTCTCCGTGTACAAGGAATGGGAAGTCCAGCCTCAAAATTGGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCACAACACATTTTTGGAGTTAGAATCTTGCCTAGAGAATGAACTTGACTTTGTTGTTCCAAGTTACTGGCGCTGGGACCCTCATAACCCTTCTATTCATGATAAGAACATGAAAATGGCTATACTGTCCTCACTTTCTGAAAATGTAGCCATGTACTCTGGACGCAATCAACTTGGTTACGTAGTAGCTCAAACGGGGAAACATGTTCAACTACATCCATCTTGTTCCTTGCTTGTATTTTCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTTCGTTCAGAGTCTAATGAATATTTGTTCTGTGTGAGTGCTGTTGACTTTCAATCATTATACAACCTTAAACCTCCTCCCTTGTTTGATGTATCCAAGGTGGAAGAGCAGAAGTTGCAAACAAAGACGCTGGTTGGTTTTGGCAAACATGTTCTCAAGAGATTTTGTGGGAAAGGAAATTTGCTTGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAACGAATATTTGTTGACGTGAATTTTGACGAGAACTACATTCAGTTGTATGCCTGTTCACATGATATGAATACAGCTAGTAAGCTGGTGAATGATGTTTTACAATATGAGAAGAAGAGGTTACACACTGAATGTATGGAAAAATGTTTGTATCATGGGTTTGGTTCCTCATCACCCGTGGCTATGTTTGGCTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCTTCCTTTGAGTGTTGATGTGTTTCACCCAAACGTAAATGCAATTGACGAAATGGAGCTCCATATGTTTTTTGAGAAAAATACTTCTGGTTGTATATGTGACATGCAAAAGTTCACAGGCATGGTGAAAGATGTTGAGGATAAAGCAAAATGGGGCAAGATAACATTTATGACCTCCAATGCTGCCAAAAGAGCTGCTGAGCTGGATGGAGAAGAGTTTTGTGGTTCGCCCCTAAAAATAGTTCATTCACAGTCAGCTATGGGAGGGGATACAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCTTCGTAGGCCTATCAAAGCAGTTGGCATAATCAAATGTGATAAAAATGATGTGGATTTTATCATTAGAGATTTTGAAAACCTTATTATAGATGGAAGAAGGTATGTTCGTTGTGCTCCCAGTGATAAGTATTTGGACAACATTCTTATAACTGGGCTTGACAAAGAGGTTCCTGAGACTGAAATTTTGGATATACTAAGATCTGCTACTAGTAGAAGGATTCTAGATTTTTTCTTTAAGAGAGGAGACGTTGTTGAAAATCCACCATGCAGTGCGATTGCAGAGACGATATTAAAAGAAATCTCCCCCTTAATGCCCAAAAAAAACCCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCCACCTAAGCCGAAGGATTATTCGATGAATGCTTTAATTCATTTTGATGGAAGATTACATTTAGAAGCAGCAAAAGCTTTGGAGAAAATTGATGGAAAGGTGTTGCCTGGATTTCTTTCTTGGCAGAAGATAAAGACCCAGCGTTTGTTTCACAGCACCTTGATATTTTCTCCTCCAGTGTATCGTGTGATTAAGCGACAACTAGAAAAGGTGCTGGCAAGTTTCAACAATTTAGAAGGTCTTGAGTGGAATCTAGACAAGACTCCTAATGGCTCCCACCGAGTGAAAATAACAGCCAATGCCACAAAGACGGTGGCAGAAGGTAGGAGACTTCTGGAAGAACTTTGGAGAGGGAAAGTCATTGTCCACGACAACCTCACCCCTGCCGCTCTACAGCCCATATTGTCCAAAGATGGTTCTAGTCTTACAAGCAAAATACAGCAAGCGACATCAACTTACATTCAATTTGATAGGCGCAACATGAAGTTACGGATATTTGGTTCGCCGGACAAGATTGCTTTGGCTGAGAAAAAGTTAATTCAATCTCTCTTGTCCCTCCATGAAGAAAAACAGTCAGTAATCTGTCTGAGTGGAAAGGACCTACCTTCTGATTTTATGAAGCAAGTGGTTAAGAATTTCGGGCCAGATCTTCATGGACTAAAAGAGAAGATACCCGGGGCAGATCTTAGGCTCAACACACGCAACAAGACAATCCTTCTTCATGGTAACTCGGAGTTGAAATCAAGAGTGGAGGAAATAACTTTTGAGATTGCACGTTTAAGCCATCCTTCAAGTGAGAGATTTGACACTGCACCTAGTTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGATATCAGCTTGAAGGTTGTGGTCATTTGTTCTGCCGGTCATGTGTGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATACGTTGTGCTCATCAGGGCTGTGGAAATCATATTTTGCTTGTAGATTTCAGAACTCTCCTGTCAAATGATAAGTTGGAAGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCCTCAAGTTCGGGAACCTATAGGTTTTGCCCATCTCCTGACTGCCCCTCAATCTATAGAGTTGCAGATCCCGAGACAGCTAGTGCGGCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCACATAGAGTATCATCCATATGTTTCATGTGAGAGATACCGACAATTCAAGGATGACCCGGATTCATCTCTGAGGGATTGGTGCAAAGGGAAAGAACAAGTTAAGAATTGCCCGGCATGTGGGCATGTAATTGAGAAGTACACTGCAAATCTGGCTGGGAATGAGATTTTGATATTGCGTCTACCTACATTTCATGTTGTCAATGGAAGCTCACAAGAACGAAACAAGTTGGCATGCAACGCACATAACCTTACCTATTTGGATGTGTCAATGCGTGACAAGCTTAATAAAGGATTGACTATTCAAAATCTTCCAAATCTTGTGTCTTTTTCAAATGAAGGTTTACCTATCAATTTACAAACTTTTATCGTCTGCAGTCGTGGAAGTTCTTGGACAAGAGCTATCAGTGAGTGGAGTTTGCAAAGGCTCACTTGTCTTACAACATTACACATTGAAGGTGATGATCTTTTGAATGCACTTATGGAAATGGATATGCCATTGCTTTCAAATTCTCTTGTGTCACTATACATATATAATCTTTTTGATGTAAAATGCTTGGATGGAAAGTGGCTGCAGCATCTGTCATCTCTTGAAAACCTTGAGATTGCATACTGTCGAAAACTCGAATCCTTGCCAGAAGAGAGACTTCCTTCTTCTCTTTCTGTATTGACCATCAAGAAGTGTCCTTTATTGGAAGCAAGTTGCAAAAGCAATGGAGGGAAAGAGTGGCCTAAAATTTCTCACATTGCATGCTTAATTATCAACAGAAAAGTGATCATATGA 5712 0.4116 MKKTFPTANHRTTTRHDSYLRRQPLWPADHHRNPRFHSNHLHDRPRFPNFIVNLRLTHRRNLRREEIETLIADCNPNPEKFSFPPNESIAASLNFNNRTDAISAVVWFWESRLSECRHDLSPEFIEMNSGNPKHGDELNFRLRSVFMSHVKELMEGKEINRWINEWDRISKEIKQVNSLLSKPFPIRVQDENLDRKKMLDGEQNLVEKRLKEFEYAMENILMYLEENNNNDDDVNVIKFGERFDWEKICNFIVRERRRLEEGLPIYAYRKEILQQIYHQQITVLIGETGSGKSTQLVQFLADSGVGANESIVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRITFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLRKRVEMRLIIMSATADAKQLSDYFYGCGIFRVPGRNFPVEVRYVPSNYEGGSRSSVVDTYVSDVVKMATEIHRTEKEKEGTILAFLTSQLDVEWACEKFEVPSAVALPLHGKLSSEEQFQIFKNYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPSSGMSVLKICWISQSSANQRAGRAGRTEPGRCYRLYSEADYQSMEPNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPCTSSIERAIGNLIQLGAIKLNNDVHELTPEGRRLARMEIEPRLGKLILSCFQYTLGREGIALAAMMANARSVFCRVGNEGDKQKSDCQKVQFCHCDGDLFTLLSVYKEWEVQPQNWKNKWCWENSINAKSMRRCHNTFLELESCLENELDFVVPSYWRWDPHNPSIHDKNMKMAILSSLSENVAMYSGRNQLGYVVAQTGKHVQLHPSCSLLVFSQRPSWVVFYELRSESNEYLFCVSAVDFQSLYNLKPPPLFDVSKVEEQKLQTKTLVGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVDVNFDENYIQLYACSHDMNTASKLVNDVLQYEKKRLHTECMEKCLYHGFGSSSPVAMFGSGAEIKHLELEKLPLSVDVFHPNVNAIDEMELHMFFEKNTSGCICDMQKFTGMVKDVEDKAKWGKITFMTSNAAKRAAELDGEEFCGSPLKIVHSQSAMGGDTTFSFPAVEARISWLRRPIKAVGIIKCDKNDVDFIIRDFENLIIDGRRYVRCAPSDKYLDNILITGLDKEVPETEILDILRSATSRRILDFFFKRGDVVENPPCSAIAETILKEISPLMPKKNPHISSCRVQVFPPKPKDYSMNALIHFDGRLHLEAAKALEKIDGKVLPGFLSWQKIKTQRLFHSTLIFSPPVYRVIKRQLEKVLASFNNLEGLEWNLDKTPNGSHRVKITANATKTVAEGRRLLEELWRGKVIVHDNLTPAALQPILSKDGSSLTSKIQQATSTYIQFDRRNMKLRIFGSPDKIALAEKKLIQSLLSLHEEKQSVICLSGKDLPSDFMKQVVKNFGPDLHGLKEKIPGADLRLNTRNKTILLHGNSELKSRVEEITFEIARLSHPSSERFDTAPSCPICLCEVEDGYQLEGCGHLFCRSCVVEQCESAIKNQGSFPIRCAHQGCGNHILLVDFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPETASAAFVCGACYSETCTRCHIEYHPYVSCERYRQFKDDPDSSLRDWCKGKEQVKNCPACGHVIEKYTANLAGNEILILRLPTFHVVNGSSQERNKLACNAHNLTYLDVSMRDKLNKGLTIQNLPNLVSFSNEGLPINLQTFIVCSRGSSWTRAISEWSLQRLTCLTTLHIEGDDLLNALMEMDMPLLSNSLVSLYIYNLFDVKCLDGKWLQHLSSLENLEIAYCRKLESLPEERLPSSLSVLTIKKCPLLEASCKSNGGKEWPKISHIACLIINRKVII 1903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02668 1903 ProSiteProfiles TRIAD supradomain profile. 1517 1731 IPR044066 -
Mepo5g02668 1903 Gene3D - 440 614 IPR027417 -
Mepo5g02668 1903 PANTHER ATP-DEPENDENT RNA HELICASE 255 901 - -
Mepo5g02668 1903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1517 1597 IPR013083 -
Mepo5g02668 1903 SMART ibrneu5 1588 1653 IPR002867 GO:0008270
Mepo5g02668 1903 Pfam IBR domain, a half RING-finger domain 1597 1653 IPR002867 GO:0008270
Mepo5g02668 1903 Pfam DEAD/DEAH box helicase 268 424 IPR011545 GO:0003676|GO:0005524
Mepo5g02668 1903 SMART ha2_5 655 751 IPR007502 GO:0004386
Mepo5g02668 1903 Pfam Helicase conserved C-terminal domain 475 594 IPR001650 -
Mepo5g02668 1903 CDD BRcat_RBR 1603 1656 - -
Mepo5g02668 1903 ProSiteProfiles Zinc finger RING-type profile. 1521 1564 IPR001841 -
Mepo5g02668 1903 FunFam RBR-type E3 ubiquitin transferase 638 744 - -
Mepo5g02668 1903 SMART helicmild6 497 595 IPR001650 -
Mepo5g02668 1903 SMART ultradead3 261 446 IPR014001 -
Mepo5g02668 1903 SUPERFAMILY RING/U-box 1603 1658 - -
Mepo5g02668 1903 SUPERFAMILY L domain-like 1721 1877 - -
Mepo5g02668 1903 CDD SF2_C_RHA 441 603 - -
Mepo5g02668 1903 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 379 388 IPR002464 -
Mepo5g02668 1903 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 617 660 - -
Mepo5g02668 1903 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Mepo5g02668 1903 Gene3D - 639 744 - -
Mepo5g02668 1903 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 440 614 - -
Mepo5g02668 1903 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 437 IPR014001 -
Mepo5g02668 1903 Pfam Helicase associated domain (HA2) 656 750 IPR007502 GO:0004386
Mepo5g02668 1903 Gene3D Ribonuclease Inhibitor 1703 1884 IPR032675 -
Mepo5g02668 1903 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 467 635 IPR001650 -
Mepo5g02668 1903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 774 IPR027417 -
Mepo5g02668 1903 CDD DEXHc_RHA-like 280 436 - -
Mepo5g02668 1903 SUPERFAMILY RING/U-box 1520 1597 - -
Mepo5g02668 1903 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 820 896 IPR011709 -
Mepo5g02668 1903 Gene3D - 246 439 IPR027417 -
Mepo5g02668 1903 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 246 439 - -
Mepo5g02668 1903 Pfam Zinc finger, C3HC4 type (RING finger) 1521 1552 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02668 Mepo-Chr5 32353631 32363113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02668 1520 1688 C3H Transcription Factor Family AT2G19610 21.547 3.17e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02668 K12818 - gmx:100810008 2307.72