Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02642 ATGTCCACAGCCGAGCCACCATCTTCCACCACCATCACCACAACCGGCGTAGGTCTCGGCTACGGCATCACAATCGCCGTAAGCATCCTTGTCCTCATCTCCACCATCATGCTCGTTTCCTACCTCTGCGTCCGTATAAAATCACACGGACGCAGAGACTCCTTCCATCTCGACATCCACCATCAAGCTCATACTATTATTAACTCGGGCTCGGCTCAGCCGAGTCCATTTATCTTGGGCTTGGAAAAGCCCATGATTGAATCATACCCAAAGATGATACTTGGAGAGAGTAGAAGATTGCCCAAACCCAATGATGGCCAGTGTGCTATTTGTTTGACTGATTATCTTCCAAAGGAAACAATACGCTGTGTTCCAGATTGTCAACATTGTTTTCATGCAGAGTGTGTTGATGAGTGGCTGAAAATGAGTGCCACATGTCCTTTGTGTCGGAATTCTCCGGCTCCGTCGCCGATAACTACACCGGTGGCCACGCCGTTGTCGGAGCTTGCTCCTCTGGCTTTTCATGCCAGGTGA 534 0.4981 MSTAEPPSSTTITTTGVGLGYGITIAVSILVLISTIMLVSYLCVRIKSHGRRDSFHLDIHHQAHTIINSGSAQPSPFILGLEKPMIESYPKMILGESRRLPKPNDGQCAICLTDYLPKETIRCVPDCQHCFHAECVDEWLKMSATCPLCRNSPAPSPITTPVATPLSELAPLAFHAR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02642 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Mepo5g02642 177 SMART ring_2 108 149 IPR001841 -
Mepo5g02642 177 Pfam Ring finger domain 107 150 IPR001841 -
Mepo5g02642 177 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Mepo5g02642 177 CDD RING-H2_EL5-like 107 150 - -
Mepo5g02642 177 SUPERFAMILY RING/U-box 100 156 - -
Mepo5g02642 177 PANTHER RING-H2 FINGER PROTEIN ATL67 9 175 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02642 Mepo-Chr5 32031929 32032462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02642 1 177 C3H Transcription Factor Family AT5G07040 56.667 1.20e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02642 - - lja:Lj3g3v0787250.1 263.462