Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02587 ATGTCAAGCAAGAAGAAGACCAAAAGCAAAAACACCAATAGCGACGAAGAAGACGATGACGTTTTCTTCTACCGTTTCTGCGCTTCATCCTCAACCCCCAACACCACCATCACCACCACCAACAACCAAATCCAATCCTCAAAATCAAACAACAACAACAAAGCACCATCAACAGGAGAAACCTTAGCACCATCAAAATCAACCATATACGTTTCAAATCTAGATTACTCCTTAACTAACTCCGATCTCCATACTCTCTTTTCCACCTTCGGCCGTATAGCGCGTGTGACAGTTTTAAAAGACCGTCACACGCGCTTAAGCCGAGGTGTTGCTTTTATTCAATTTGTTCTCCGTCACGACGCGCAACGCGCCGTGACGGAGATGAATAAGAAGATTTTGAATGGTAGGACTTTGAGTGCTTCTATTGCTGCTGATAATGGACGTGCTCCCGAGTTTATTAAGAAGCGGGTTTATAATACTGAGACTGGTTTGTGTTTTGAGTGTGGTGGGAGTGGGCATTTGTCTTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGGTGAGGCCGCAGCCGAAGAAGCCGCGAAGGGGATTTAGTGGGGCCAAAGACAGAGAAGAGGAGGATGAGGAGGAGGATGAGAATGATAGGATTGGCACGGAGCGGTTTGAGGAAGATAATTGGGCTTCTGTGGTGGATGATGGAGCTGATGAGAGGTTGTTGGGGAGGAATGGGAATGAGGGTGGGGGTTTGGATGATAAGAAGAGGAGGAAGAAGAAAGGGAAGATAACTGGGTATTTTAGTGATGAGAGTGATCATGAGGACGATGATTGA 831 0.4645 MSSKKKTKSKNTNSDEEDDDVFFYRFCASSSTPNTTITTTNNQIQSSKSNNNNKAPSTGETLAPSKSTIYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVLRHDAQRAVTEMNKKILNGRTLSASIAADNGRAPEFIKKRVYNTETGLCFECGGSGHLSYECPKNQLGPRVRPQPKKPRRGFSGAKDREEEDEEEDENDRIGTERFEEDNWASVVDDGADERLLGRNGNEGGGLDDKKRRKKKGKITGYFSDESDHEDDD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02587 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Mepo5g02587 276 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 274 IPR044598 GO:0000398|GO:0005689
Mepo5g02587 276 MobiDBLite consensus disorder prediction 180 276 - -
Mepo5g02587 276 Gene3D - 1 151 IPR012677 -
Mepo5g02587 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Mepo5g02587 276 Pfam Zinc knuckle 164 180 IPR001878 GO:0003676|GO:0008270
Mepo5g02587 276 SUPERFAMILY Retrovirus zinc finger-like domains 156 181 IPR036875 GO:0003676|GO:0008270
Mepo5g02587 276 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Mepo5g02587 276 MobiDBLite consensus disorder prediction 204 218 - -
Mepo5g02587 276 SMART rrm1_1 68 141 IPR000504 GO:0003723
Mepo5g02587 276 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Mepo5g02587 276 MobiDBLite consensus disorder prediction 34 62 - -
Mepo5g02587 276 SUPERFAMILY RNA-binding domain, RBD 63 149 IPR035979 GO:0003676
Mepo5g02587 276 MobiDBLite consensus disorder prediction 219 240 - -
Mepo5g02587 276 Gene3D - 155 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02587 Mepo-Chr5 31353133 31354499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02587 68 129 Eukaryotic Initiation Factors Gene Family AT3G11400 43.548 6.30e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02587 K13154 - psat:127137475 360.918