Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02560 ATGCGATATTCTGTTTATCCAAACAGGGACAAAATAGGCGAAGAAATGCAACATAGTATTCCCGCTTTGCCATGGATGCGAGAACCTGTTGACGTCACTCTCTCTCAGCAACTTCCTCTTCATTCAGTCCCTTCTCTCCACCCTAAGTTGAAGTCAGCGTTGGAAGACATGGGAATCTCAAACCTATTCCCAGTGCAAGTTGCAGTTTGGCACGAAACAGTTGGCCCCGGCAATTTTGAGCGAGACATTTGCGTTAACTCACCCACCGGAAGCGGCAAAACCCTCGCATATGCTCTCCCCTTAGTGCAGATGCTATCAGGCCGCGTCACCAAATGTCTCCGCGCCTTGGTTGTCGTTCCCACTCGCGACCTTGCTTTACAGGTCAAACAAGTCTTTGATGCCGTTGCATCTCCGTTAGGCCTGCGTGTCGGATTAGCTGTCGGACAATCATCCTTAGCCAATGAGATTTCTGAGCTCGTTGAAATGCCAGCATGCGATATAGGCACATGCTATGATCCAAATTACATTTCACTTCCTCGATTTCAGAGTAAAGTTGACATATTGGTAGCAACTCCTGGCAGGCTTATGGATCACATTAATACTACCATAGGCTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGATTACTTCGTGAGGCATACCAATCATGGTTGCCAACTGTGCTTGAACTGATCCAATCTAATGATGATGGTTTTTCTCAACCGTCTGCTTCTTTTTTCCCCTGTTCTGCTAGTGCACTACGAACCAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGACAAGCCTTATCCCAGGCTGGCAAAGATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGACTTATTCAGCTTAATTTGCACCACCCTTTATTATTGAAAGCTGGACAAATGCGTTATCGGCTCCCAGAAAATTTAGAATCTTATAAACTGATTTGTGAAAAAAAGGTTAAGCCTTTATATTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAGTGCCTAATTTTTACAAAATCTGTGGATTCAACACACCGTCTCTGCCAATTGCTAAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTACAACATCAACGTGTAAGAAGTAAGACATTGAACGAATTCCGTAAAGGGGCTTTTCAAGTGCTTGTATCTTCTGATGCATTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATAACGTGCCCAAATTCATAAAAACTTATGTTCATCGGGCGGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTAATGCGAAAGGCCAAGGGTGGTTCTTGTCTGGATCATATTGTTCCGTCCAGTCAAATTGAAGCACTCAATACTACCTACCAATCAGCACTGACAAAATACATGGAGATAATTTCAAAGACACGAAAGAAACCCAAGAATTAG 1527 0.4348 MRYSVYPNRDKIGEEMQHSIPALPWMREPVDVTLSQQLPLHSVPSLHPKLKSALEDMGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSGRVTKCLRALVVVPTRDLALQVKQVFDAVASPLGLRVGLAVGQSSLANEISELVEMPACDIGTCYDPNYISLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELIQSNDDGFSQPSASFFPCSASALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGQMRYRLPENLESYKLICEKKVKPLYLIALLKSLGEEKCLIFTKSVDSTHRLCQLLNCFEDLQIDIKEYSGLQHQRVRSKTLNEFRKGAFQVLVSSDALTRGMDVEGVRNVINYNVPKFIKTYVHRAGRTARAGQTGRCFTLMSEDEVRRFKKLMRKAKGGSCLDHIVPSSQIEALNTTYQSALTKYMEIISKTRKKPKN 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02560 508 Pfam DEAD/DEAH box helicase 64 292 IPR011545 GO:0003676|GO:0005524
Mepo5g02560 508 Pfam Helicase conserved C-terminal domain 331 442 IPR001650 -
Mepo5g02560 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 484 IPR001650 -
Mepo5g02560 508 CDD SF2_C_DEAD 319 450 - -
Mepo5g02560 508 PANTHER RNA HELICASE 45 466 - -
Mepo5g02560 508 Gene3D - 28 309 IPR027417 -
Mepo5g02560 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 306 IPR014001 -
Mepo5g02560 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 463 IPR027417 -
Mepo5g02560 508 SMART helicmild6 361 442 IPR001650 -
Mepo5g02560 508 CDD DEADc_DDX51 50 306 - -
Mepo5g02560 508 Gene3D - 317 508 IPR027417 -
Mepo5g02560 508 SMART ultradead3 58 322 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02560 Mepo-Chr5 31034360 31040683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02560 82 457 Eukaryotic Initiation Factors Gene Family AT3G13920 24.352 1.91e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02560 K14807 - vvi:100258315 672.544