Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02473 ATGAAAAACAATAGAAGAGAATGTCACATTTGTAACAAGTCATTTTCTAATGGAAAAGCATTGGGAGGCCACATGAAAACTCACTTAGCTAAATTACCAATCCCTCTAAAATCTTCAATCAATAACCAAGCACCTGAATACTCGGTTGATTCAACCAAACATCAAACTCACTCTATTTCTACATCTTCCTCATCAATTTTCAATCCAAAAAAGCCTATACATAATCCCCGATCTTTCAAGAGAAACTTTTATCACACCCTTGGCGTGTTTGATTCTTTTCCAAAAAACCCAACTGGAAAAAGATCGAAACGCGGTCGTAGACAATTTAATTTGGCTGAAGAGAATGCAATATTTAATGTGGCTGAAGAGAAAGAAGAAAATACAAGATTTAATGTGACTGAAGAAAATGGAGAGGATACACAAGTTGATGCAGTTGAAGAAATAAATGAGAATACACAAGTTAAATTAGTGTATAGTGATTTGGATAAAGAAGTTGCAGAAACACTGGCTATTATTTGTGTGAATGAATGGAAACAAGTTGAGGAGAAATACTATAGTGAGAAGAAAAAGGTTGGCGAAAATGGCAACATCGTGTTTGAGTGTGATATTTGTCATGAAGTGTTTCAATATTGCAAAGATCTTGTTAAACATGGAGCAATCCATAAGAAAATTAACAATATATCTGAAGAAATTGGTATAAGTGGAAAGGAATATGATGTTGTAAATGAAGAAGTTCACAAGTGCACATATTGCTTGGAAATTTTTGAATCTGATCATGTACTTCAGGAACACAAAACGGTACACTTATCCAATTTTTCTAATTCTAACCCATAA 834 0.3345 MKNNRRECHICNKSFSNGKALGGHMKTHLAKLPIPLKSSINNQAPEYSVDSTKHQTHSISTSSSSIFNPKKPIHNPRSFKRNFYHTLGVFDSFPKNPTGKRSKRGRRQFNLAEENAIFNVAEEKEENTRFNVTEENGEDTQVDAVEEINENTQVKLVYSDLDKEVAETLAIICVNEWKQVEEKYYSEKKKVGENGNIVFECDICHEVFQYCKDLVKHGAIHKKINNISEEIGISGKEYDVVNEEVHKCTYCLEIFESDHVLQEHKTVHLSNFSNSNP 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02473 277 Gene3D Classic Zinc Finger 174 271 - -
Mepo5g02473 277 MobiDBLite consensus disorder prediction 50 72 - -
Mepo5g02473 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 221 IPR013087 -
Mepo5g02473 277 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mepo5g02473 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 273 IPR013087 -
Mepo5g02473 277 MobiDBLite consensus disorder prediction 50 71 - -
Mepo5g02473 277 Pfam C2H2-type zinc finger 198 223 - -
Mepo5g02473 277 Pfam C2H2-type zinc finger 245 269 - -
Mepo5g02473 277 Pfam C2H2-type zinc finger 6 30 - -
Mepo5g02473 277 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 270 IPR044303 GO:0006355
Mepo5g02473 277 SMART c2h2final6 6 28 IPR013087 -
Mepo5g02473 277 SMART c2h2final6 199 221 IPR013087 -
Mepo5g02473 277 SMART c2h2final6 246 268 IPR013087 -
Mepo5g02473 277 ProSitePatterns Zinc finger C2H2 type domain signature. 201 221 IPR013087 -
Mepo5g02473 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Mepo5g02473 277 SUPERFAMILY beta-beta-alpha zinc fingers 7 221 IPR036236 -
Mepo5g02473 277 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02473 Mepo-Chr5 29893187 29894020 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02473 5 270 C2H2 Transcription Factor Family AT1G02030 26.642 1.34e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g02473 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02473 - - mtr:11415208 291.967