Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02471 ATGGAGAACAATGGTAGAGTGTGTCTCATTTGTAACAGGTCATTTTCCAATGGGAAAGCTTTGGGAGGACATATGAAATCTCACTATGCTAAACTACCAATCCATCCAAAACCCTCAATCAACAACCACGTACCTGAATACTCAGTTGAGTTGACCAAACATCCAACTCACTCTATCTCTACATCTTCACCATCAATTGTTAATCCAAGAAATAACTCAACATACAATCCTCAATCTTTGAAAGTGAAATTCAACTATACCCTGTCAAACTTTGGTAGGAATAGTGTGTTTCAGTCTTATCCAACAAACCCAACTGGAAAAAGATCAAAACGCAAACCAAGACAGTTTCATATGGCTGAAGAAAGAGAAGAGAATACACAATTTAACATGGCTGAAGAAAAAGAAGAGAACACACAATTTAATATGGCTGAAGAAAAAGAAGATAATACACAATTACAATCAGTGTATAGTGATTTGGATATAGAAGTTGCTGAAACACTAGGTGTTATTCTTAAGGAAGAATGGAAACAAATTGAGGACAAATACTACACTGAGAAGAAAAAAGCAAGTGAAAATGGAAATGTTGTGTTTGAGTGTGATATTTGTAATGAAGTGTTTCAATCTGGCAAAGATCTTTTCGGACATGAAGAGATCCATAGGAAAACTAACAATCTAGCAGGAGAGATTGGTAGAAGTGGAAACATATATGATGCAGTAACTGAAAAAGTGCATAAGTGTGAATATTGCTTTGACATCTTTGAATCTTGTCATGTATTGGAGGAACACATGAAGGTACACCTATACAATTATTATGATTCTGACCCATAG 828 0.3527 MENNGRVCLICNRSFSNGKALGGHMKSHYAKLPIHPKPSINNHVPEYSVELTKHPTHSISTSSPSIVNPRNNSTYNPQSLKVKFNYTLSNFGRNSVFQSYPTNPTGKRSKRKPRQFHMAEEREENTQFNMAEEKEENTQFNMAEEKEDNTQLQSVYSDLDIEVAETLGVILKEEWKQIEDKYYTEKKKASENGNVVFECDICNEVFQSGKDLFGHEEIHRKTNNLAGEIGRSGNIYDAVTEKVHKCEYCFDIFESCHVLEEHMKVHLYNYYDSDP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02471 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Mepo5g02471 275 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Mepo5g02471 275 MobiDBLite consensus disorder prediction 95 115 - -
Mepo5g02471 275 SUPERFAMILY beta-beta-alpha zinc fingers 196 266 IPR036236 -
Mepo5g02471 275 Pfam C2H2-type zinc finger 196 221 - -
Mepo5g02471 275 Pfam C2H2-type zinc finger 7 30 - -
Mepo5g02471 275 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 268 IPR044303 GO:0006355
Mepo5g02471 275 SMART c2h2final6 197 219 IPR013087 -
Mepo5g02471 275 SMART c2h2final6 6 28 IPR013087 -
Mepo5g02471 275 SMART c2h2final6 244 266 IPR013087 -
Mepo5g02471 275 Gene3D Classic Zinc Finger 172 268 - -
Mepo5g02471 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Mepo5g02471 275 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Mepo5g02471 275 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mepo5g02471 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 266 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02471 Mepo-Chr5 29877822 29878649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02471 8 266 C2H2 Transcription Factor Family AT1G02030 25.000 2.20e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g02471 zf-C2H2_6 8.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02471 - - mtr:11415208 486.108