Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02393 ATGAAGAAGCTCTCAGTTGGTGATGCATTATCGTTACTTGCAGCAGTAAAACGTAGGTTTGGATATGAGAAAAGGGAAAAGTATGGATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAAGAATTGATGCTAGGGATGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTCGAGATTCAACATCTTCTTGCCAACTGAATATGAAATCAAACTTCCATTAGATCGAGACGATGATGACGATGAACAACAAGAAGGTCGTATGTTAGAGACAAAAGATGCATTTGCTTTTCTCGAGAAAGTAAAAGATGTGTTTCATGATAAGAATAGGGAAAAGTATGATGAGTTTTTAGAAATTGTTAAGGATTTTAAGGTTCGAAGAATTGATATAAGTGTTGTTGCGGCAAGAGTGAATGAGCTGTTTCAAGGGCATACAGATTTAATTTTGGGAGTCAATGCCTTCTTGCCAAAGAAATATCGAATCACAACTTCAGTTCAGATGGACACTGGTTAG 531 0.3635 MKKLSVGDALSLLAAVKRRFGYEKREKYGSFLQIMKDFKAERIDARDVKLRVYELLDGHEDLISRFNIFLPTEYEIKLPLDRDDDDDEQQEGRMLETKDAFAFLEKVKDVFHDKNREKYDEFLEIVKDFKVRRIDISVVAARVNELFQGHTDLILGVNAFLPKKYRITTSVQMDTG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02393 176 ProSiteProfiles PAH domain profile. 93 164 IPR003822 GO:0006355
Mepo5g02393 176 SUPERFAMILY PAH2 domain 3 74 IPR036600 GO:0006355
Mepo5g02393 176 Pfam Paired amphipathic helix repeat 26 70 IPR003822 GO:0006355
Mepo5g02393 176 Pfam Paired amphipathic helix repeat 117 161 IPR003822 GO:0006355
Mepo5g02393 176 FunFam Paired amphipathic helix protein Sin3 8 71 - -
Mepo5g02393 176 ProSiteProfiles PAH domain profile. 2 73 IPR003822 GO:0006355
Mepo5g02393 176 SUPERFAMILY PAH2 domain 95 163 IPR036600 GO:0006355
Mepo5g02393 176 PANTHER SIN3B-RELATED 95 169 IPR039774 GO:0003714
Mepo5g02393 176 Gene3D Paired amphipathic helix 8 71 IPR036600 GO:0006355
Mepo5g02393 176 Gene3D Paired amphipathic helix 99 162 IPR036600 GO:0006355
Mepo5g02393 176 FunFam Paired amphipathic helix protein Sin3 99 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02393 Mepo-Chr5 29037930 29038460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02393 1 84 WRKY Transcription Factor Family AT4G12020 41.667 1.34e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo5g02393 PAH 4.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02393 K11644 - mtr:120579360 328.946