Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo5g02385 | ATGAATGAAGAAGTAGAAAGCGGCGAAGGTCCACCAACAAACGATCTATGTTCAATCTGTCACGGAAACTTCCAACTCCCATGTCAAGCAAATTGTTCTCACTGGTTTTGCGCAAACTGTATCATCCAAGTTTGGCAGTATTCTTCTCCTCTTCAACCTTGCAAATGTCCTCTCTGTCGTCGTCCTATTAACCTTCTTGTTCCCACCGACATCGTCGATGCCGGTGGCAACAACAACAATTCTGAGCAAGATCGTTTGAATTTGGCTGATATTCAAAGATATAACCGTGTTTTTGGTCAACAATCTAATGCTAGTATTGTTCAGAGATTACGTGATCTTCCTTTTCTTTTGAAAAGGCTTTTTAAGGATTTTGTTAACCCTAATACTTCTCTTCCTCTTGTTATTAGAGCTCGTGTTTTCTTTACGATGCTAATAAGTATCATATACATCTTCAGCCCTATTGACATCATTCCAGAAGGGATGTTGGGAATAATTGGTCTTTTGGATGATGTCCTAATTGCTCTAATCTTTTTCCTACATGTTGCTGCACTCTATAGATCAGTACTTTACCTCCGACATGGGGGTTCGTGA | 591 | 0.3993 | MNEEVESGEGPPTNDLCSICHGNFQLPCQANCSHWFCANCIIQVWQYSSPLQPCKCPLCRRPINLLVPTDIVDAGGNNNNSEQDRLNLADIQRYNRVFGQQSNASIVQRLRDLPFLLKRLFKDFVNPNTSLPLVIRARVFFTMLISIIYIFSPIDIIPEGMLGIIGLLDDVLIALIFFLHVAALYRSVLYLRHGGS | 196 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo5g02385 | 196 | SUPERFAMILY | RING/U-box | 14 | 66 | - | - | |
| Mepo5g02385 | 196 | ProSitePatterns | Zinc finger RING-type signature. | 32 | 41 | IPR017907 | - | |
| Mepo5g02385 | 196 | SMART | ring_2 | 17 | 59 | IPR001841 | - | |
| Mepo5g02385 | 196 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 104 | IPR013083 | - | |
| Mepo5g02385 | 196 | Pfam | Zinc finger, C3HC4 type (RING finger) | 14 | 64 | - | - | |
| Mepo5g02385 | 196 | Pfam | Protein of unknown function (DUF1232) | 142 | 175 | IPR010652 | - | |
| Mepo5g02385 | 196 | PANTHER | UNCHARACTERIZED | 7 | 193 | IPR038896 | GO:0061630 | |
| Mepo5g02385 | 196 | CDD | RING-HC_RNF113A_B | 11 | 68 | - | - | |
| Mepo5g02385 | 196 | ProSiteProfiles | Zinc finger RING-type profile. | 17 | 60 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo5g02385 | Mepo-Chr5 | 28939880 | 28942571 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo5g02385 | 44 | 196 | C3H Transcription Factor Family | AT1G72175 | 60.131 | 2.75e-50 | 158 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo5g02385 | K15707 | - | csin:114301598 | 265.003 |