Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02384 ATGGATGTGGAACATCAACGCGGCGAAGGTCCAGCAACGAACGATCGATGTTCAATCTGTCACGAAAACTTCCAACTCCCATGTCAAGCAAATTGTTCTCACTGGTTTTGTGCAAACTGTATCATCCAAGTTTGGCAATACTCTTCTTCTCTTAAACCTTGCAAATGTCCTCTCTGTCGTCGTCCTATTAATCTTCTTGTTCCCACCGACGTTGGCAACAATGACGATTATGAGCAGGATCGTCTGATTGTGGCTGATATTCAGAGATATAATCGTCTTTTTGGTGATCAATCTAATGCTAGTATTACCCAAAGAATACTTGATCGTCGGTTTCTTTTAAGGATACTTTTTAGGGATTTTGTAAACCTTAATACTCTTGTTATCAGAGCTCGTGTCTTCATTACGGTAGTTGTGGATCATGTCGGACTTGAGATCCTTAGTCGGAGTGTTGGAGATAACTTTGAACCGTTGCTCCTATGA 480 0.4125 MDVEHQRGEGPATNDRCSICHENFQLPCQANCSHWFCANCIIQVWQYSSSLKPCKCPLCRRPINLLVPTDVGNNDDYEQDRLIVADIQRYNRLFGDQSNASITQRILDRRFLLRILFRDFVNLNTLVIRARVFITVVVDHVGLEILSRSVGDNFEPLLL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02384 159 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Mepo5g02384 159 SMART ring_2 17 59 IPR001841 -
Mepo5g02384 159 ProSiteProfiles Zinc finger RING-type profile. 17 60 IPR001841 -
Mepo5g02384 159 PANTHER UNCHARACTERIZED 7 138 IPR038896 GO:0061630
Mepo5g02384 159 SUPERFAMILY RING/U-box 14 66 - -
Mepo5g02384 159 Pfam Zinc finger, C3HC4 type (RING finger) 14 64 - -
Mepo5g02384 159 CDD RING-HC_RNF113A_B 14 68 - -
Mepo5g02384 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02384 Mepo-Chr5 28926840 28927656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02384 7 114 C3H Transcription Factor Family AT4G33940 36.111 1.51e-24 92.4