Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02279 ATGGGATTCCGGTTAGAAGAAAAAGTACCAAAATCAAAATACAGAAAGGGATTATGGTCACCTGAAGAAGATAACAAGCTTAGTAATTATATCATTAAGCATGGTCATAGTTGTTGGAGCTCTGTCCCCATTAAAGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGGTGGATTAACTACCTGAGGCCAGGACTAAAGAGAGATAATCAAACTAGATTTGTATTGGTCAGGTGGTCTCAGATTGCACAACAGCTGCCAGGAAGGACCGACAATGAGATTAAAAATCATTGGCATTCATATCTGAAAAAGAAAGAAGTCAAAAGTAAGGATATCGAATCTCATGATCAAATTCAATATGCTTGTTCAAGCTCAGATACCATGGACTCCTTACTATCAACTCAAAAATATGCAATTCAGGATCCTAAATATGTGTGGTTAGAAAACATTAACAAATCAACAGCTACAACACACTCAGATCAATCTATTTCAAAGAATTATAACACTGCCAATGAAATTTGTCAGAGCTCATTACCAAAACTTTTATTTTCTGAGTGGCTCTCACTAGATCAAGTAAACGATGGCAACTCTCTTAATTCAGATGATTCTTTGGTCTTGAAAAATGGCTATGATCAAAATTTGATTTTTCAAGAAAATGTTATTCAAATGCCAGAAGGGCAGTTTGGTGAAGAGTTTCATGATAGTCTAATTCAAAATCTAGACAATGATGTTTACTGTTCACAGTTTCAATTATCAAATCAAGTGGATGAAAATGAATTGGTCCACTATCTGAACAATGATGGAATGTATGTATGA 819 0.3516 MGFRLEEKVPKSKYRKGLWSPEEDNKLSNYIIKHGHSCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRDNQTRFVLVRWSQIAQQLPGRTDNEIKNHWHSYLKKKEVKSKDIESHDQIQYACSSSDTMDSLLSTQKYAIQDPKYVWLENINKSTATTHSDQSISKNYNTANEICQSSLPKLLFSEWLSLDQVNDGNSLNSDDSLVLKNGYDQNLIFQENVIQMPEGQFGEEFHDSLIQNLDNDVYCSQFQLSNQVDENELVHYLNNDGMYV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02279 272 SUPERFAMILY Homeodomain-like 16 104 IPR009057 -
Mepo5g02279 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Mepo5g02279 272 FunFam MYB transcription factor 13 69 - -
Mepo5g02279 272 Gene3D - 71 121 - -
Mepo5g02279 272 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mepo5g02279 272 Pfam Myb-like DNA-binding domain 78 103 IPR001005 -
Mepo5g02279 272 Gene3D - 16 69 - -
Mepo5g02279 272 PANTHER MYB DOMAIN PROTEIN 55 1 210 - -
Mepo5g02279 272 CDD SANT 19 63 IPR001005 -
Mepo5g02279 272 ProSiteProfiles Myb-like domain profile. 79 103 IPR001005 -
Mepo5g02279 272 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mepo5g02279 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 107 IPR017930 -
Mepo5g02279 272 SMART sant 68 105 IPR001005 -
Mepo5g02279 272 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02279 Mepo-Chr5 27147802 27150484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02279 10 189 MYB Transcription Factor Family AT5G52260 44.828 1.50e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g02279 Myb_DNA-binding 4.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02279 K09422 - gmx:100803537 333.569