Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02205 ATGACTAGGAAGAAGGTAAAACTTGCTTTTATCTCTAATGATTCAACAAGAAAGGCAACCTACAATAAAAGAAAAAAGGGTATCATCAAGAAGGTTAGAGAACTCACCATTCTTTGTGGTATTCCAGTATGTGCTATAATTTCCAATCCTTTTAATTCTAAAACAGAGGTGTGGCCAGATCTAGAGGGGGCCAGACAGGTGATTGAGAGGTACCAGAACTCATCAACAAAAGATGAAACAAAGAATATGAACCAAGAGAGTTTCCTATTGCAGAGGATTACTAAAGCCAGGGAGCAACTTCAAAAGCAAAGCCATGACAATCGTGAGAAAGAGCTGAACAATCTTATGATTGGGTACATGAAAAGTAGAAAGCTTCCTGATGAATTGTCTGTGTCTGAATTGAAAGATTTTGATAAGCTTATTGAGAAAATTCTGAAGGACATGGATAACAAGATTGATGCACTTGGTTGA 471 0.3715 MTRKKVKLAFISNDSTRKATYNKRKKGIIKKVRELTILCGIPVCAIISNPFNSKTEVWPDLEGARQVIERYQNSSTKDETKNMNQESFLLQRITKAREQLQKQSHDNREKELNNLMIGYMKSRKLPDELSVSELKDFDKLIEKILKDMDNKIDALG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02205 156 Coils Coil 90 113 - -
Mepo5g02205 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g02205 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g02205 156 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Mepo5g02205 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mepo5g02205 156 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Mepo5g02205 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Mepo5g02205 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo5g02205 156 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mepo5g02205 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g02205 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02205 Mepo-Chr5 25137491 25137961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02205 1 155 MADS-box Gene Family AT5G26630 45.513 7.68e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo5g02205 SRF-TF 6.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02205 - - mtr:11436886 239.965