Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02183 ATGATCTTTTCATTCATGGTTCGTGGAGGTAAGTCTTATGTGTTTATCATGGTTGTTTGTGGTGGAAAAGAATCGTTTGGAAGGTTTATCGGAGCTAGGTTAGGATACGTAATTCGCGGCGAGGTTGTTGTCCTTCTTCGAAAAGCTTTGGCTAAGATCGTTGGCGCCATGGCTGAGTTGAAGAACTCGCCTGGTTTCATTCTATCACCCATTGTTGCCTGGCCAGACAAAGCTCTGTATACTGCCGACTGCGGCCTCCTGTGGCGTACTTTGGAATTCACAACTATGCATAACCCTGGCCTGGCACAGTTCATTCTTGGAACAAGTAGGTTCAGTAGGCCAGATGTGGCGTTTCGGCCGTCCCCTATCGCCACCCGAAGTTCCTGGCGCCTTAACGCGTTGATGCATTTTGTTTCATGCGACGCCCAGTTTCTTTCGCGGCGATGTGTCTTCTACGGTGGAACGAAAGGTGCCTACAGGCATGTTAGCACTCCAACGATCAAGAACTTAACCCCTCCCGCAAAGAATGTGGCGTCCGTTGATGATCTAATCCGGACGGCCCTTGAAGTGTCTCGCTGGGAAGCTTTGATTCCGTCCGTGAAGAGGAGATTGAGCTTTCTGAAGTTGCATCACAACGCCATGACTAGGAAGAAGGTAAAACTTGCTTTTATCTCTAATGATTCGGCAAGAAAGGCAACCTACAATAAAAGAAAAAAGGGTATCATCAAGAAGGTTAGAGAACTCACCATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCAATCCTTTTAATTCTAAAACAGAGGTGTGGCCTAATCTAGAGGGGGCTAGACAGGTGATTGAGAGGTACCATAACTCATCAACAAAAGATGAAACAAAGAATGTGAACCAAGAGAGTTTCCTATTGCAGAGGATTACTAAAGCCAGGGAGCAACTTCAAAAGCAAAGCCATGACAATCGTGAGAAAGAGCTGAACAATCTTATGATTGGGTACATGAAAAATAGAAAGCTACCTGATGAATTGTCTGTTTCTGAATTGAAAGATTTTGATAAGCTTATTGAGAAAATTCTGAAGGACATGGATAACAAGATTGATGCACTTGGTTGA 1110 0.4441 MIFSFMVRGGKSYVFIMVVCGGKESFGRFIGARLGYVIRGEVVVLLRKALAKIVGAMAELKNSPGFILSPIVAWPDKALYTADCGLLWRTLEFTTMHNPGLAQFILGTSRFSRPDVAFRPSPIATRSSWRLNALMHFVSCDAQFLSRRCVFYGGTKGAYRHVSTPTIKNLTPPAKNVASVDDLIRTALEVSRWEALIPSVKRRLSFLKLHHNAMTRKKVKLAFISNDSARKATYNKRKKGIIKKVRELTILCGIPACAIISNPFNSKTEVWPNLEGARQVIERYHNSSTKDETKNVNQESFLLQRITKAREQLQKQSHDNREKELNNLMIGYMKNRKLPDELSVSELKDFDKLIEKILKDMDNKIDALG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02183 369 CDD MADS_SRF_like 215 297 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo5g02183 369 PANTHER MADS BOX PROTEIN 216 352 - -
Mepo5g02183 369 PRINTS MADS domain signature 216 236 IPR002100 GO:0003677|GO:0046983
Mepo5g02183 369 PRINTS MADS domain signature 236 251 IPR002100 GO:0003677|GO:0046983
Mepo5g02183 369 Coils Coil 303 326 - -
Mepo5g02183 369 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 223 263 IPR002100 GO:0003677|GO:0046983
Mepo5g02183 369 SMART madsneu2 214 273 IPR002100 GO:0003677|GO:0046983
Mepo5g02183 369 SUPERFAMILY SRF-like 214 295 IPR036879 GO:0003677|GO:0046983
Mepo5g02183 369 ProSiteProfiles MADS-box domain profile. 214 260 IPR002100 GO:0003677|GO:0046983
Mepo5g02183 369 Gene3D - 226 309 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02183 Mepo-Chr5 24845520 24848813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02183 214 368 MADS-box Gene Family AT5G26630 46.154 2.63e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo5g02183 SRF-TF 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02183 - - mtr:11436886 242.276