Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02164 ATGGGAAGGAGTAAGGTGCAGCTAAAACGGATCGAAAACAAGATCAATCGACAGGTTACTTTCTCAAAAAGAAGAACCGGTTTGCTCAAGAAAGCTAAAGAAATATCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATCTTCTCTCATAATGGAAAGCTCTTTGATTACTCAACTGATTCATGTATGGAGCAGATTCTGGAACGCCATGAAAGGTATGGCTATGCGGAGAGACTACTTGTAGGAAATGATACTGATACTCAGGAAAACTGGATGATGGAATACACAAGACTCAAGGCAAAGATTGAGCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGATTTAGATTCAATGAGCCTTAAAGAGCTTCAATGTCTAGAGCAGCAGTTAGATACTGGTCTCAAGAACATACGTACCCGCAGAACTCAAGTCATGTATGAAGCCATTTCTGAACTTCAGAAAAAGGAGAAAGGGATTCAAGAGCAGAATAACATGCTCTCAAAGGAGATCAAGGAGAAGGAGAAGGTTGTTGCACAAGAGGCTGCTGCTCAATGGGAGCAGCCAAACTACAGGGTTGATACATCTTTCTTACTACAAGATCCCCTTCCCGGTTTGAACATGGGTGGCAATTACGGTGAGGGAGCACAAGAATTGGGGAGGAACGGGCTGGACCTGACCCTGGAAACACTATATTATTAA 705 0.4241 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSHNGKLFDYSTDSCMEQILERHERYGYAERLLVGNDTDTQENWMMEYTRLKAKIELLQRNHRHYMGEDLDSMSLKELQCLEQQLDTGLKNIRTRRTQVMYEAISELQKKEKGIQEQNNMLSKEIKEKEKVVAQEAAAQWEQPNYRVDTSFLLQDPLPGLNMGGNYGEGAQELGRNGLDLTLETLYY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02164 234 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo5g02164 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo5g02164 234 Coils Coil 88 108 - -
Mepo5g02164 234 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Mepo5g02164 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g02164 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g02164 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g02164 234 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mepo5g02164 234 Coils Coil 151 171 - -
Mepo5g02164 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Mepo5g02164 234 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Mepo5g02164 234 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Mepo5g02164 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo5g02164 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g02164 234 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo5g02164 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02164 Mepo-Chr5 24534776 24540314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02164 1 233 MADS-box Gene Family AT1G26310 60.887 8.61e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo5g02164 K-box 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02164 K09264 - gmx:100819745 342.043