Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02017 ATGGAGGAGAGAGTTTGTAAGTATTGTTTGAAAAGATTTCCTTGTGGAAAATCTCTTGGTGGTCACATTAGGACTCATATGAGTAGTGAAAATTCACTTCAATCTAATGAAGAGAAAAGAATGAATGCTAATGCTAGTGTTAATGCTATGTTTAAGTTTGATGAGGGAAGAAAGAGAAAGAGATTGGATTTAGGGTCTAGTGGTGGTAGTGGTGGTGATGATGGTAACCTTATTTATGGTCTTAGAGAGAATCCCAAGAAAACAACTAGGTTTGTGCACTCCAATGCTGCTGCTGCTGCTACTGTTCAGATGGAGAAATTCTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCTCTGTGTGGTCACATGGCTTGTCACTCTGAGAAAGATAAGGGAGCCAATCGGATTGAAAGTGTGTCTGGTGTCCGCGAGAAGCAGAAATTGGTTATGGATAGTCAGTCTGATACCGAGGCTTCGGTTCAGACTGATTCAAGGAGATCACGGAGGATGAAGTTCAAGAATCTTAGCGGCGGTGATAACAAGTCTTCGTCTTCGCTTCATTGGGGAAATTGTTCTTCCTCGGTTTCGGAGGTTGAGCAGGAACAAGAAGATGTTGCTAGGTGTTTGATGCTGCTGTCTAGAGATTCTACTTATAAGGGTCGGTTTCCTTTGGTGACAGAGTCTTCTGATAACAATTCAGTTGTTGTTGAAGAAAAATCACCTTCTGTTGATACCAAGTTTGCTGTTATGAATCGTGGAAAGAACATTGTTGGTGCTAGAAACAATGGTTTTGAGCTTGCTGAGAAGAAGTTGAACAAGGATGGGAAGATGAAATCGGTCGAAATTGGTTATGTTTCTGATAATTCTGATTCTGGATACTTCACATATGGTCCTAAAAAAGTAGAATCAGATGATTCAAGTGATGACTTTTTCAGGAATGATGCCAAGTTTTCAAAAGTTGGATACTTTTCTAGTTTTCAGGATCATGGTTTTGAATCAAGTAAGAAGATAATGAGCAGAGGAAGAAACAGAAACGGTGCTGAATTCAAGAAAGTAGTTTTGGAAAATTCTAGCAAGAAAACAAAAAATGGTTACAACAATGATGAAGTGTACGAAAGTTTGAAGATTGATAGAGAAAGTTATTCTGAAGATTCAGCTTATGAGAGTGATGAAAACAGCTCAGAGAGTGATTCTTATCCTGCTCCAAAGGCACAAAGCAATAGGAACATGAATGGAAAGACTAATAAGAAGTCAAGTACCAAAGGAAAGAAGAAAATGAAGTCAAAGAAAAGCAAAGAACATGAGTGTCCAATTTGTAACAAGATTTTCAAGTCAGGACAAGCTTTAGGGGGTCACAAAAGGTCCCATTTTATTGGAGGAAATGATGACAACACTCTTGTGATTAGACCAGCTGGTGGTGCTCATGCTCATGCTGCTGCTGCACCTCCTGCTGTTGTTGTTGCTGCTGCTGCTAATCCATCTTTATTTGATCTTAATCTACCTGCTCCTGATGATGAATGA 1527 0.3929 MEERVCKYCLKRFPCGKSLGGHIRTHMSSENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDLGSSGGSGGDDGNLIYGLRENPKKTTRFVHSNAAAAATVQMEKFCKECGKGFPSLKALCGHMACHSEKDKGANRIESVSGVREKQKLVMDSQSDTEASVQTDSRRSRRMKFKNLSGGDNKSSSSLHWGNCSSSVSEVEQEQEDVARCLMLLSRDSTYKGRFPLVTESSDNNSVVVEEKSPSVDTKFAVMNRGKNIVGARNNGFELAEKKLNKDGKMKSVEIGYVSDNSDSGYFTYGPKKVESDDSSDDFFRNDAKFSKVGYFSSFQDHGFESSKKIMSRGRNRNGAEFKKVVLENSSKKTKNGYNNDEVYESLKIDRESYSEDSAYESDENSSESDSYPAPKAQSNRNMNGKTNKKSSTKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRSHFIGGNDDNTLVIRPAGGAHAHAAAAPPAVVVAAAANPSLFDLNLPAPDDE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02017 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Mepo5g02017 508 SMART c2h2final6 4 26 IPR013087 -
Mepo5g02017 508 SMART c2h2final6 436 458 IPR013087 -
Mepo5g02017 508 SMART c2h2final6 106 128 IPR013087 -
Mepo5g02017 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Mepo5g02017 508 MobiDBLite consensus disorder prediction 149 190 - -
Mepo5g02017 508 Pfam C2H2-type zinc finger 108 130 - -
Mepo5g02017 508 Pfam C2H2-type zinc finger 436 458 - -
Mepo5g02017 508 Pfam C2H2-type zinc finger 5 28 - -
Mepo5g02017 508 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Mepo5g02017 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Mepo5g02017 508 MobiDBLite consensus disorder prediction 383 435 - -
Mepo5g02017 508 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mepo5g02017 508 Gene3D Classic Zinc Finger 105 167 - -
Mepo5g02017 508 MobiDBLite consensus disorder prediction 394 418 - -
Mepo5g02017 508 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 508 - -
Mepo5g02017 508 MobiDBLite consensus disorder prediction 163 177 - -
Mepo5g02017 508 ProSitePatterns Zinc finger C2H2 type domain signature. 438 458 IPR013087 -
Mepo5g02017 508 SUPERFAMILY beta-beta-alpha zinc fingers 107 458 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02017 Mepo-Chr5 22472165 22473852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02017 5 508 C2H2 Transcription Factor Family AT1G26610 42.509 1.34e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g02017 zf-C2H2_6 3.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02017 - - tpra:123908903 684.485