Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01910 ATGGGGAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACAAATGGACGCCAAGCAACCTATGCCAAAAGAAAGAATGGAATAATGAAGAAAGCTAGTGAATTATCTATATTATGTGATATAGATATTATACTTCTTATGTTTTCTCCAGGTGGAAAACCTTCATTATGCACAGGGAGGCGCAGCAACTTTGAGGAGGTGATTGCAAAGTTTGCTCAACTAACTTCACAAGAAAGGGCAAAGAGGAAACTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGACTTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAGTGATCAAGCCAAGCTTTTACATAAGCGTATCTCCGAAATTCATGAGAGATTAAGCAATTGGTCTGACATTGAAAAAATTAGTAGTGTGGATAAACTGGGACAGTTGGAAAATTCACTCAAGGAGTCTCTTAATCAAATTCAAACTCATAAGGAAAATGTACAAAAGCAACAACTGGCATCATTGCAATGCAATAATCAGTTCAATGAATTGCAGCTTCCCTACAAAATGAGTCATCAACAGCATCTTCAATCTTTGTCTTGGATGGTTAATGGTGACAGCCAGAATTTAGTACTACCTGAAGACTCAACCTTGCTTCTCCACAAAGATGTAGAGGGATCAACAAGCTCATCATTTGGAAGTTATGCTAGTTATCTTGGCTCAAGCACCAAAACAAACATGTCCAATTCTGGTCAAGAAAGCTGTATCATTAATGACATGAGCAATGCTACTACTGCTCCAGTGAGACTACAACAATTTAATGGACAGGTTCCATACATACCAAACAATTTCAACATTATGAATGATATGAAGCTCCAACCAGTTACAGGGATGAATAATCCACATGAAAATCAAGTAGATAATTATTATGTCAATGCAAACTTTGAAGCACCTAAACAAGGGTTTGATCAGTCTAATAATCATCATGGTTGGACTTCTAATTCAGGTCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCATCAGGGAAATTTTCCACAAGTGCATTTTGGATTCACATAG 1098 0.367 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRSNFEEVIAKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQDFYGTSSQTVEDLSDQAKLLHKRISEIHERLSNWSDIEKISSVDKLGQLENSLKESLNQIQTHKENVQKQQLASLQCNNQFNELQLPYKMSHQQHLQSLSWMVNGDSQNLVLPEDSTLLLHKDVEGSTSSSFGSYASYLGSSTKTNMSNSGQESCIINDMSNATTAPVRLQQFNGQVPYIPNNFNIMNDMKLQPVTGMNNPHENQVDNYYVNANFEAPKQGFDQSNNHHGWTSNSGPCAVNIFDEHLYHQGNFPQVHFGFT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01910 365 Coils Coil 77 97 - -
Mepo5g01910 365 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g01910 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Mepo5g01910 365 CDD MADS 2 54 - -
Mepo5g01910 365 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Mepo5g01910 365 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g01910 365 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g01910 365 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g01910 365 Coils Coil 150 177 - -
Mepo5g01910 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 202 - -
Mepo5g01910 365 Coils Coil 114 134 - -
Mepo5g01910 365 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Mepo5g01910 365 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Mepo5g01910 365 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01910 Mepo-Chr5 21045096 21049520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01910 1 358 Type I MADS-box Gene Family AT2G03060 46.036 1.12e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo5g01910 SRF-TF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01910 - - lang:109356063 520.776