Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01905 ATGGATGATGATATAGAGGGAAAAGGTTCTTATTGGAGTGAGGAAGGTGAAAACAGTGAGAGAATAAACCATAATAACACTAACATCAATGATGAGTTAGAGAACCCTAATGGAAGTGGCAAAGAGGAAGATAATGGACAGTCTAGTAAATGTGCAAGAGGGCATTGGAGGCCTGCTGAAGATTCCAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAAAACTGGAATCTTATAGCTGAAAAGTTGGAAGGAAGATCAGGCAAAAGTTGTAGGCTGAGATGGTTCAACCAATTGGATCCAAGAATCAACAGAAGAGCATTTACAGAAGAAGAAGAAGAGAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCAATGATAGCTAGACTATTCCCAGGAAGAACAGACAATGCTGTGAAAAATCACTGGCATGTTATAATGGCAAGAAAGTATAGAGAACAATCCAGTGCATACAGGAGAAGAAGATTGAGCCAAAATGTTTACAGCAGAATGGAGCAAAATCCAAGCTTTGGCCGCAGAGACACCACAACAATGGAAACAGAATCATCACCACCTTATTTTCTCAATGGAGCCCCACTTGGGAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAACATTGTGCTCATGGTGGTAGGGTTGAGTATGGTTTAAATGTTTTACCTCACATGAGTGGTGAGAGAGAAGCTATGCAAGGACCCCTACATGTTGGTTTGTATGCTCAACAAGCACCTTTTGATTACTTCTCTGTTGGTAGAAGCAATGACATGGTGGAAGAACCATTCAATCATATCAGATACTGGGATGGCACTAATGATGAATATCAACAACAACTAACTAGTGTCTACCATCATTATCCTCAGCAATATTTGATGACAAAGCAAAATCAAAACAATCACAATTTTCACATTTTCTCAAATTCATCAGCAACACATCATAATGCAGAAAACAGTGAAAAAGCTCTGATTGATGACACCCCAGATGCTGTTGAAACTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1068 0.3923 MDDDIEGKGSYWSEEGENSERINHNNTNINDELENPNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQNVYSRMEQNPSFGRRDTTTMETESSPPYFLNGAPLGNSMSIFPYATSFQHCAHGGRVEYGLNVLPHMSGEREAMQGPLHVGLYAQQAPFDYFSVGRSNDMVEEPFNHIRYWDGTNDEYQQQLTSVYHHYPQQYLMTKQNQNNHNFHIFSNSSATHHNAENSEKALIDDTPDAVETPQFFDFLGVGAT 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01905 355 SMART sant 52 101 IPR001005 -
Mepo5g01905 355 SMART sant 104 152 IPR001005 -
Mepo5g01905 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 99 IPR017930 -
Mepo5g01905 355 PANTHER MYB PROTEIN-RELATED 53 273 - -
Mepo5g01905 355 Gene3D - 53 104 - -
Mepo5g01905 355 FunFam MYB transcription factor 53 104 - -
Mepo5g01905 355 SUPERFAMILY Homeodomain-like 52 146 IPR009057 -
Mepo5g01905 355 MobiDBLite consensus disorder prediction 1 56 - -
Mepo5g01905 355 MobiDBLite consensus disorder prediction 22 45 - -
Mepo5g01905 355 MobiDBLite consensus disorder prediction 1 21 - -
Mepo5g01905 355 CDD SANT 56 97 IPR001005 -
Mepo5g01905 355 CDD SANT 107 147 IPR001005 -
Mepo5g01905 355 ProSiteProfiles Myb-like domain profile. 48 99 IPR001005 -
Mepo5g01905 355 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
Mepo5g01905 355 Pfam Myb-like DNA-binding domain 105 148 IPR001005 -
Mepo5g01905 355 Pfam Myb-like DNA-binding domain 53 99 IPR001005 -
Mepo5g01905 355 FunFam MYB transcription factor 106 177 - -
Mepo5g01905 355 Gene3D - 106 177 - -
Mepo5g01905 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01905 Mepo-Chr5 20947135 20949399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01905 4 178 MYB Transcription Factor Family AT1G69560 65.241 1.01e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g01905 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01905 K09422 - gmx:100776292 399.823