Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01897 ATGGCTTCAGAAGCAGAAATTTCTGAAATTTCTTCACTGTTTGAAAGAATGATCCGAAACAGAGACATGTCTCTGTTTTTACCTTTCATGTTAAGCCTTTCACAATCCTCATCTTCAAGAAACAACACCGACCCAGATCATGATTCCGATTCCGATGCCACCGAAGATTCCAGAATCATCTTGGTGAACCCATTCACACAGGGTATGGTTGTGATCGATGGAGCTTCAAGTCTTGAAGAACTCTTAAACAACCTTGGAAATGCTACAAAGACCGGTCAACCACCGGCTTCGAAGGAGTCTATAGAAGCCATGGAGAAGGTTGAGATTGAAGAAGGTGGTGGAGGAGAGTGTGTTGTTTGTTTGGAGGAATTTGAAGTTGGTGGGGTTGTGAAGGAGATGCCTTGCAAGCATAGGTTTCATGGAAAGTGTATTGAGAAGTGGTTGGGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTATTGATGAGAAAGATGATGGGAAGAAAAGGGAGGAAGAAGAAGGTGGTGAGAGAAGAAGGGTTGGTGGTGGTGAAGTTTGGGTTAGTTTTTCTATCAATAGGAGTAGGAGAAATCAAGATCAAGCTTCTTCTGGTGGTGATTCAAATGATTCTTCATCAAACCCTAGAGATGATGATGATGAGGTTGAAAATTAA 681 0.4229 MASEAEISEISSLFERMIRNRDMSLFLPFMLSLSQSSSSRNNTDPDHDSDSDATEDSRIILVNPFTQGMVVIDGASSLEELLNNLGNATKTGQPPASKESIEAMEKVEIEEGGGGECVVCLEEFEVGGVVKEMPCKHRFHGKCIEKWLGIHGSCPVCRYQMPIDEKDDGKKREEEEGGERRRVGGGEVWVSFSINRSRRNQDQASSGGDSNDSSSNPRDDDDEVEN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01897 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Mepo5g01897 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 36 162 - -
Mepo5g01897 226 MobiDBLite consensus disorder prediction 35 55 - -
Mepo5g01897 226 SUPERFAMILY RING/U-box 103 163 - -
Mepo5g01897 226 SMART ring_2 117 157 IPR001841 -
Mepo5g01897 226 MobiDBLite consensus disorder prediction 193 213 - -
Mepo5g01897 226 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Mepo5g01897 226 MobiDBLite consensus disorder prediction 167 186 - -
Mepo5g01897 226 Pfam Ring finger domain 116 158 IPR001841 -
Mepo5g01897 226 FunFam E3 ubiquitin-protein ligase RNF181 84 164 - -
Mepo5g01897 226 MobiDBLite consensus disorder prediction 167 183 - -
Mepo5g01897 226 MobiDBLite consensus disorder prediction 192 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01897 Mepo-Chr5 20855142 20856179 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01897 1 212 C3H Transcription Factor Family AT1G26800 51.628 6.42e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01897 - - zju:107429014 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01897 5 20855142 20856179 Mepo5g01897 5 20855142 20856179 ECH