Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01895 ATGGCTTCAGAAGCTGAAATTTCTGAAATTTCTTCTTTATTCGAAAGAATGATCCGAAACAGAGACATGTCTCTGTTTTTACCCTTTATGCTAAGCCTTTCACAATCCTTAAACAACAGTGACCCAGATCACGAATCCGAAACCAACGAAGATTCCACTCCTCAAAGAATCATCTTGGCGAACCCTTTGACACAGAGCATGGTTGTAATCGATGGAGCTTCAAGCCTTGAAGAACTCTTTAACAACCTTGGTAGTGCTACAAAGAATGGTCAACCACCGGCAACAAAGGAGTCTATAGAAGCTATGGAAAAGGTTGAGATTGAAGAAGGTGATGGTGGAGAGTGTGTTGTGTGTTTGGAGGAGTTTGAGGTTGGTGGTGTTGTGAAGGAGATGCCTTGTAAGCATAGGTTTCATGGAAAGTGTATTGAGAAGTTGTTGGGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTATTGATGAGAAAGATGATGGGAAGAAAAGGGAGGAAGAAGAAGGTGGTGAGAGGAGAAGGGTTGGTGGTGGTGTAGTTTGGGTTAGTTTTTCTATTAATAGGAGTAAGAGAAATCAAGATCATGATGATGAAGTTGAGAATTAA 624 0.4135 MASEAEISEISSLFERMIRNRDMSLFLPFMLSLSQSLNNSDPDHESETNEDSTPQRIILANPLTQSMVVIDGASSLEELFNNLGSATKNGQPPATKESIEAMEKVEIEEGDGGECVVCLEEFEVGGVVKEMPCKHRFHGKCIEKLLGIHGSCPVCRYQMPIDEKDDGKKREEEEGGERRRVGGGVVWVSFSINRSKRNQDHDDEVEN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01895 207 Pfam Ring finger domain 114 156 IPR001841 -
Mepo5g01895 207 SUPERFAMILY RING/U-box 98 161 - -
Mepo5g01895 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Mepo5g01895 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 41 160 - -
Mepo5g01895 207 FunFam E3 ubiquitin-protein ligase RNF181 83 162 - -
Mepo5g01895 207 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Mepo5g01895 207 SMART ring_2 115 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01895 Mepo-Chr5 20851210 20851833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01895 1 200 C3H Transcription Factor Family AT1G26800 49.510 9.22e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01895 - - ccaj:109816232 216.468