Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01884 ATGTCTTCTCAGCAACCCAGCCGTGTTGAGCCAGAAATCTGGCAGTGCTATGCAGGCAGTTCCGTTAAAATTCCAAAACTACATTCTCATGTTTACTACTTCCCATTAGGGCACTTAGAACACGTCTCCCCATCCCCAAACCCTAACACACTTGCCCTTGTTGACCGTTCCCGTCAATTCATTCCCTGCACCATCTCCGCGGTTGATCTACTCGCTGACCCTCATACCGATGAAGTCTTCGTCAAACTACTCCTCACTCCTGTCACTAATAATGGTGTTCACAAACCCCAATCTCCTGAGGTTCGTGAAGACCAAGATGATGGCAAAAAGGTTGTTTCCTATTCCAAGACTCTCACCCCATCTGATGCTAACAATGGCGGTGCATTCTCCGTGCCAGTGGAATGCGCGAAATTAATCTTCCCGCCGCTTGACCTCGATACTGAAAAGCCGTCTCAAGAACTCTCCATCAGTGACATTCACGGCAAAGTTTGGAAGTTTCGCCACGTCTACCGTGGGACTCCCTTGCGACATCTGCTTACCACTGATTGGAGTGAATTTGTTGACAAGAAGAAACTAGTAGGCGGAGATTCCTTAGTTTTCATGAAAGACTCAGATGGAAATATCTCAGTCGGAGTTCACCGACAGACAAAGTTTGGTGCTGCTGCTAAGATAACGGAAAAATCGTTTACAGAGGCAGTGGAATTGGCGGATAAAAACATGGCTTTTGAAGTTGTGTATTATCCGACGGCTAAAGGTTGGTGTAATTTTGTGGTTGATGTCAAAGTTGTGGAGGATGCAATGAATATTAATTGGAATCTTGGAGGGAGAATTGAACTTTCTTTGAAGAATTATGATTCTTCAAAGAGATGCTCAAAATTTGAGGGAACAATATCTGCTCTATCTGCTCCTAATCGTCCATGGCGGATGCTTGAGGTTAAATGGGATGAACCTAAAGTCTCACAGGTTCCGGAGCGAGTCAGTCCTTGGGAGGTTGAAACTATTTCCGACATATTTGCACTGCATCCACAATTCCACCCAACAAAAAAGCTTAGAAAATCTGATCAGGATTCTGCTGCAGTCAGTGATAAAAAGGGAGACTCCTTCGTCCCAAATATAGAGGCTTTTTTGAAGATGGTCCCAAATATAGAGTTTAAACATTTCGTGATGACATCCTCCAATCAAACATTGTTGAACAATGATGCTTTTCTTGATGGCATGCAGGGCGCCAGGCACAGACTTTTTTCCACATCAACTTCTTCCAACTTTGTGAATGATAAAAGCAATGGTTTCCTTGGGAACAATTCTACGGCAGTGTTGAATAATGTGTCAAGTGAGCCACACACTGCTGGTCCTATATCTTTGGACTTGTCACCTCATAGCCATGATATTTCTAACTCACTTGGGACAAAGATTGCCGGTACTGACAACAGCAACACCAAGAAAGTTAGTCCCGGTTCATTTATGCTATTTGGTAAGATCATAAAACCTGCTGGAAGCGATTTTCAAGAATTAGATATCATGGGAAATGATGATTGTAAAGGCTCCAATGAAATTGAAGGCATCAAACTTCCACAAAAAGAGCTTAATCGGCTTTGTGAAAGTAGTTATGCCGATAATTAG 1620 0.4315 MSSQQPSRVEPEIWQCYAGSSVKIPKLHSHVYYFPLGHLEHVSPSPNPNTLALVDRSRQFIPCTISAVDLLADPHTDEVFVKLLLTPVTNNGVHKPQSPEVREDQDDGKKVVSYSKTLTPSDANNGGAFSVPVECAKLIFPPLDLDTEKPSQELSISDIHGKVWKFRHVYRGTPLRHLLTTDWSEFVDKKKLVGGDSLVFMKDSDGNISVGVHRQTKFGAAAKITEKSFTEAVELADKNMAFEVVYYPTAKGWCNFVVDVKVVEDAMNINWNLGGRIELSLKNYDSSKRCSKFEGTISALSAPNRPWRMLEVKWDEPKVSQVPERVSPWEVETISDIFALHPQFHPTKKLRKSDQDSAAVSDKKGDSFVPNIEAFLKMVPNIEFKHFVMTSSNQTLLNNDAFLDGMQGARHRLFSTSTSSNFVNDKSNGFLGNNSTAVLNNVSSEPHTAGPISLDLSPHSHDISNSLGTKIAGTDNSNTKKVSPGSFMLFGKIIKPAGSDFQELDIMGNDDCKGSNEIEGIKLPQKELNRLCESSYADN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01884 539 Gene3D - 271 338 - -
Mepo5g01884 539 Pfam Auxin response factor 232 310 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo5g01884 539 CDD B3_DNA 113 214 IPR003340 GO:0003677
Mepo5g01884 539 FunFam Auxin response factor 112 216 - -
Mepo5g01884 539 Gene3D - 111 216 IPR015300 -
Mepo5g01884 539 SMART B3_2 114 216 IPR003340 GO:0003677
Mepo5g01884 539 SUPERFAMILY DNA-binding pseudobarrel domain 111 216 IPR015300 -
Mepo5g01884 539 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Mepo5g01884 539 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 494 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo5g01884 539 Pfam B3 DNA binding domain 115 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01884 Mepo-Chr5 20674441 20676591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01884 9 494 B3 DNA Binding Superfamily AT1G77850 37.009 2.82e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo5g01884 B3 4.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01884 - - mtr:11413246 936.791