Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01878 ATGTCCCCTCAGCAACCTATCCGTGTTGATCCAAAAATCTGGCAGTGCTGCGCCGGCGCTGCCGTTAAAATTCCAAAACTACATTCTCATGTTTCCTACTTCCCATTAGGGCACTTAGAACACGTCTCTCCATCCCCAAACCCTAGCACAATCTCCCTTCTTGACCGTTCCTGTCAATTCATTCCCTGCACCGTCTCCGTGGTTAATCTACTCGCTGACCCTTGTACCGACGAAGTGTTCGTCAAATTACTACTCACTCCTGTCACTAACAACTGTGTCCACCAACCTCTTGAGGTTCGTGGAGACCAACATGACGGGGTTGAGGTTGTTTCCTCCGGCAAAACTCTTACTCCGTCTGATGCTAATAACGGCGGTGCATTCTCCGTGCCTAGCGAATGCGCAAAATTAATATTCCCGCCACTTGACCTCCAGGCCGAAAAGCCGTCTCAGGAACTCTCAATAACTGACATTCACGGCAAAGAATGGAAGCTTCGCCACGTCTACCGTGGGACTCCCTTGCGACACCTGATCACCACCAACTGGAGTGAGTTTGTTGAGGAGAAGAAACTGATTGGTGGTGATTCCTTAGTTTTCATGAAAAAATCAACTAGAACTGGAACCGATCTCCGTTGGAATCCGCCGGCAGAAGTTTGGTGCTGCCACTAA 666 0.494 MSPQQPIRVDPKIWQCCAGAAVKIPKLHSHVSYFPLGHLEHVSPSPNPSTISLLDRSCQFIPCTVSVVNLLADPCTDEVFVKLLLTPVTNNCVHQPLEVRGDQHDGVEVVSSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQAEKPSQELSITDIHGKEWKLRHVYRGTPLRHLITTNWSEFVEEKKLIGGDSLVFMKKSTRTGTDLRWNPPAEVWCCH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01878 221 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 201 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo5g01878 221 CDD B3_DNA 114 198 IPR003340 GO:0003677
Mepo5g01878 221 SMART B3_2 114 215 IPR003340 GO:0003677
Mepo5g01878 221 SUPERFAMILY DNA-binding pseudobarrel domain 114 202 IPR015300 -
Mepo5g01878 221 ProSiteProfiles B3 DNA-binding domain profile. 112 213 IPR003340 GO:0003677
Mepo5g01878 221 Pfam B3 DNA binding domain 114 203 IPR003340 GO:0003677
Mepo5g01878 221 Gene3D - 112 210 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01878 Mepo-Chr5 20603220 20603885 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01878 8 202 B3 DNA Binding Superfamily AT1G77850 53.000 8.46e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo5g01878 B3 3.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01878 - - mtr:11412789 397.127