Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01875 ATGAGCGATCACTTGGTAGTCATCGTTGACCAACTCGACCACCCAGTTGTTCCTGTTGACCAACAACCTGCCCACCTTCCTTCCGATCCTTCCCCATCGCCATCTCCTGCCACTGCCGATGCCGGATCATCTGGATCTGGCTCGGCAGTGGATCGTGATGGCGATGATTGCGGTGATGAGGAGGAGCCTCTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAGGAGGATAGTGTTTCCAATTTGGAGACTCCCTGTGCCTGTAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAATCTGGGTATACTGCCCCACCACCTCGCCCTGTTCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTTTTGGCGATTGCAGAGGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTCTACTTCTGCGGCATGCACTCTCTGTAACTGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCCGTAAGTGATTCGAGTCTCTATTATTTAAATTGTTCACATGTCCACTGTCATATTGATTTCAAATGTGACTGGGAGCCAATTGAATTATCCTACCATCTTCTGCAGCTTTTCTTACTTCGAGCTGCTGGATTTCTCTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGCCGACAAAGACAGGAAGCAGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGTCTACACTTCGCCATAGCACCAGGACCTCCAGGACCTACAGTACAGCAGGAACAAGTGTAG 978 0.4816 MSDHLVVIVDQLDHPVVPVDQQPAHLPSDPSPSPSPATADAGSSGSGSAVDRDGDDCGDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRPVPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSVSDSSLYYLNCSHVHCHIDFKCDWEPIELSYHLLQLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPGPPGPTVQQEQV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01875 325 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 285 IPR033275 -
Mepo5g01875 325 Coils Coil 158 178 - -
Mepo5g01875 325 FunFam RING/FYVE/PHD zinc finger protein 58 126 - -
Mepo5g01875 325 CDD RING_CH-C4HC3_MARCH 70 116 - -
Mepo5g01875 325 SMART ringv_2 69 116 IPR011016 GO:0008270
Mepo5g01875 325 MobiDBLite consensus disorder prediction 10 60 - -
Mepo5g01875 325 Pfam Protein of unknown function (DUF3675) 122 221 IPR022143 -
Mepo5g01875 325 Pfam Protein of unknown function (DUF3675) 250 275 IPR022143 -
Mepo5g01875 325 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Mepo5g01875 325 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Mepo5g01875 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 126 IPR013083 -
Mepo5g01875 325 SUPERFAMILY RING/U-box 68 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01875 Mepo-Chr5 20565338 20569566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01875 69 156 C3H Transcription Factor Family AT2G37950 30.769 4.07e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01875 - - gmx:100779674 385.571