Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01867 ATGGAAGAAAGAAATGATGGTGAAAAACTTGATGAAGTTATCTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGGTTTTACCTAAAGAGAAAGGTTCAACAAAGGCCTCTGTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCATGGGATCTTCCAAAGTTTGCAAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCCACAGGGACAGATAAACCTATCTACTCCTCAGAAGGTTCTAAGTGCATTGGCCTAAAGAAATCCTTAGTCTTTTACAAAGGTAGAGCTGCTAAAGGAATCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCATAGATCCACTTTCACCAAAGAAGTACTTAGAGAAAACCATTCCTGCTAATGAATCATGGGCTATCTGTAGAATATTCAAGAAAACAAATTCTACGGCTCAAAGAGCTTTGTCTCACTCTTGGGTTTCTTCCCTATCTGAAACAAGAACCTCTAATATGCTAACCAAAAATCAAGAAATCACCCAATTTTGTTCAAGCAACATGTCATTGACAAAGAATACATCCTTGGCCAATCACTTCTACACTAACAACAATGATAGCCAAAATTTTGATATCGATGTTACCCCTTATAAATCAATTATTAGTCCATTACTACATAAAGGCTTTCATCACTTGCCCATTTCAAATGAAGATCTTAATACAAACTTGATATTCTCATCATCATCTCCACTTGAAACATCTAACACTAATAGTGATATTATTTCCAAATCTACAATGGATGTTTCATCAATGTTGTTGAATATGTCATCATCCTCAATGCTTAGTGATTTTAACAAGACATGTGATGAGGTTGCAACTACAAATTTCATGAATGGTGGGTTGCAAGAGCAATTTAGTGACTACTCATTACCATTTGGTAACCAATATGATAATAATGCATTGGTTAAGGTACCTTATAATGTTAATGTGAATATGCCTCGTATTGATGAGCAAGAATTGATGAATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTATTGATGTTCCCTCTAGTTATTCCACAACCAAGTGCTACACTTAA 1200 0.3625 MEERNDGEKLDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDKPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLIDPLSPKKYLEKTIPANESWAICRIFKKTNSTAQRALSHSWVSSLSETRTSNMLTKNQEITQFCSSNMSLTKNTSLANHFYTNNNDSQNFDIDVTPYKSIISPLLHKGFHHLPISNEDLNTNLIFSSSSPLETSNTNSDIISKSTMDVSSMLLNMSSSSMLSDFNKTCDEVATTNFMNGGLQEQFSDYSLPFGNQYDNNALVKVPYNVNVNMPRIDEQELMNFNIGDAWKSNLLWDTSFCPIDVPSSYSTTKCYT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01867 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Mepo5g01867 399 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Mepo5g01867 399 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Mepo5g01867 399 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Mepo5g01867 399 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Mepo5g01867 399 FunFam NAC domain-containing protein 35 23 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01867 Mepo-Chr5 20497768 20499999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01867 2 316 NAC Transcription Factor Family AT1G26870 55.623 1.92e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo5g01867 NAM 2.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01867 - - gmx:100783995 533.872