Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01820 ATGCAACAAGATCATATGAAGAAGCAGAAGCAGAAGCAGCTTCTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTCACGTGGACTCAAGAGGAGGATGATATATTGAGGGATCAAATTGGAATCCATGGAACTGAAAATTGGGCAATAATTGCTTCTAAATTCAAGGACAAGACTACAAGACAGTGTAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGAAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCCGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACATTTCATACACAAATTCAAATAACAAAAGGATTATTTTCCGAGATGAAGCGTCAGAATCTGCAGTAGATTTTAAGAAGATGAGGAGGTCACATATCCCGGATGATGCAGAAAAGATCAGCTTCGCAGACAGATCACATAAACAAAATGAAACTTCAAGAGCACCATTGGCAGTTTTAGCACAAAACTCTCATAATGCCAATAACTTGCCAGACCAGAATCATGTCTGCAATGTGAAGTTCAGTGGTTATGCTCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCGAAGATAAACGCGTTGATGCAACAAGCCGAGCTACTAACTTCACTAGCACTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTATGAACCGAAACAAAGAATCAGATGTTTCTGGATATAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTATTGGAAGACTTGAAGAATAATAGTGAAGAAATTCAGCCATGTTGGAGGTATATGGAATTCTATGAAGACTCTCCAGAAAGTTCTGAACACAGTACAGGATCAACTACTATGCCTCATTGTGCTGGTGAGAATTTAGAACACTCACTGCATCAAGATAGTGGAACTGAACTGAAGTCTATACAAATTGAACATCAAAAGGAAATTGGAGGATGTGATCAATTGATTCTTTCTAGTGCAACTTTGGATCAAGATATATTCGCATCTTGTGAAGAACAGATAGACAATGATGGCATTGTTTGTTCCTTGTCAAGTGCAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTATGTTCAGATCCTTAGCTGCAGGAATTCCAAGTCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGATTCTCCATCCCTCAACCCAATCGCAAACCCCTCACAACCGCCCCTCTGCAAAAGAGCCCTGCTACAAAGTTAA 1401 0.3897 MQQDHMKKQKQKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNISYTNSNNKRIIFRDEASESAVDFKKMRRSHIPDDAEKISFADRSHKQNETSRAPLAVLAQNSHNANNLPDQNHVCNVKFSGYAQNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDVSGYKIPDLQLVDLKDLLEDLKNNSEEIQPCWRYMEFYEDSPESSEHSTGSTTMPHCAGENLEHSLHQDSGTELKSIQIEHQKEIGGCDQLILSSATLDQDIFASCEEQIDNDGIVCSLSSAEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMDSPSLNPIANPSQPPLCKRALLQS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01820 466 FunFam Transcription factor MYB124 21 77 - -
Mepo5g01820 466 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Mepo5g01820 466 Gene3D - 16 77 - -
Mepo5g01820 466 CDD SANT 81 122 IPR001005 -
Mepo5g01820 466 Gene3D - 80 152 - -
Mepo5g01820 466 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Mepo5g01820 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Mepo5g01820 466 Pfam Myb-like DNA-binding domain 29 89 - -
Mepo5g01820 466 SMART sant 25 74 IPR001005 -
Mepo5g01820 466 SMART sant 77 125 IPR001005 -
Mepo5g01820 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Mepo5g01820 466 CDD SANT 28 72 IPR001005 -
Mepo5g01820 466 PANTHER MYB PROTEIN-RELATED 28 192 - -
Mepo5g01820 466 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01820 Mepo-Chr5 19692951 19698520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01820 2 316 MYB Transcription Factor Family AT2G02820 60.909 3.65e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g01820 Myb_DNA-bind_6 1.1e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01820 5 19692951 19698520 Mepo5g01820 5 19692951 19698520 ECH