Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01814 ATGGCTCCTATCATCACTCCGGTGTCCTCAATTGTTGTTGGAAAAATTAACATCAAGCTTCATGTGCGTGTTATCAACGTTTGGACCGTTCCAGATTTTTCAAGGCCAACTGAAGACAACTTCATTCATTTGCTTCTATTGGATGAAAAGCTTGGAAAGATTCAAGCAACCGACAAGAAAGCCCTCATTCCTAAGATACGATCCTTGGTTCAAGATGGAGCAACATATGAGATTGATAATGTGTTGGTTGCTCACAACGAAAATAAGTATAGATGCACTGGGCACAGGTGGAAATTGAACCTGATAGATAGAACAAAATTCACAAAGATTGATAACAACACAATACCTGCGTACCATTTTGAATTTGTGCCATTCAAGGAAATGCTTGAATCAACCAAGGAAGACATACATGTTGATGTCATAGGACGTGTGGTGGAGAGAGATTCCTTGAAGGAGAAGGAAGTTAATGGAAAAAAAACCAAGCTAATTGACATAACTTTAGAGGATTCTGAGGGCAATAGGATCCATTGTTCTTTGTGGGATACCTACATTGTTAGGATGGATGCCTATCTCACTGTCCATGATCCGAATTCTCCTATCGTTGTTGTAATCCATTTATGCAAGCTTAAAAAATATTATGGCACAATGGGTATTTCAAATGCTTTTTATGGAACGAAACTAATTTTGGATGATGATTATCCAGTTGTTAAAGAATATCTTTCCAAGATTGATGGTGCTGATGTTGAGGTTACACAGGGACAATGTGTGGTAATAGTCCTTGCCTTTGTAATTGGTATTGAAGCAGAATATAGCTGGTATTATGACGCATGTACTACATGTGCTGGTAGGATTAAAATAATTGCTGGAAGAATGTTTTGCCCAAGGTGTAACCAGAGCAGGAATGTTGTTCCCAGGTTCAAATTGCATGTGCAAGTTATGGACAATACCGGTTCCACAAGTTTCATTCTTTTTGATTGTAATGTGTCAAACTATGTTGGGAAAAGTGTGCAGGATTTGATTGATGCACAAGGACAGGCTAACAATGATAAAGGATATCCGTCAGATCTTGATGTCTTAGTTGGAAAAAAAAATGTTGTTCAAGGTGGAGGTCACAAATGGAAATTTGCATCACAGCTGGCATAA 1143 0.3832 MAPIITPVSSIVVGKINIKLHVRVINVWTVPDFSRPTEDNFIHLLLLDEKLGKIQATDKKALIPKIRSLVQDGATYEIDNVLVAHNENKYRCTGHRWKLNLIDRTKFTKIDNNTIPAYHFEFVPFKEMLESTKEDIHVDVIGRVVERDSLKEKEVNGKKTKLIDITLEDSEGNRIHCSLWDTYIVRMDAYLTVHDPNSPIVVVIHLCKLKKYYGTMGISNAFYGTKLILDDDYPVVKEYLSKIDGADVEVTQGQCVVIVLAFVIGIEAEYSWYYDACTTCAGRIKIIAGRMFCPRCNQSRNVVPRFKLHVQVMDNTGSTSFILFDCNVSNYVGKSVQDLIDAQGQANNDKGYPSDLDVLVGKKNVVQGGGHKWKFASQLA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01814 380 SUPERFAMILY Nucleic acid-binding proteins 119 244 IPR012340 -
Mepo5g01814 380 Pfam Replication factor-A C terminal domain 259 348 IPR013955 -
Mepo5g01814 380 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Mepo5g01814 380 CDD RPA1_DBD_A_like 19 107 - -
Mepo5g01814 380 Gene3D - 242 376 IPR012340 -
Mepo5g01814 380 Pfam Domain of unknown function DUF223 44 132 IPR003871 -
Mepo5g01814 380 PANTHER OS03G0429900 PROTEIN 255 365 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mepo5g01814 380 CDD RPA1_DBD_B_like 139 239 - -
Mepo5g01814 380 SUPERFAMILY Nucleic acid-binding proteins 239 365 IPR012340 -
Mepo5g01814 380 Gene3D - 118 241 IPR012340 -
Mepo5g01814 380 Gene3D - 4 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01814 Mepo-Chr5 19587794 19589810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01814 20 345 Core DNA Replication Machinery Family AT5G08020 21.180 2.15e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01814 - - mtr:112422829 343.969