Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01797 ATGGCAAAATTGTACCATCTCTTCCTTTTGACATGTTTGGTGGTAACAATATCTACATTAGTGCATGCTAATGTCAAAGAGGACAAAGCATACTGGGATAGGATATTACCGACGCTTAATACTACATATTGGCAGAAAAAAGCATCAATTGCTGCGAAGGCAAACGACAAAGCTTATACTCCTGACCCATATGCAGTCTCCGGAAATCTGTCTTCTACCGTTAGCGAAATGATAATTGGTGGCAATAACGGAAGAAGGAATTTGGTGGGGTTGGGCAATAGTTCATGCATGGCCACAAACCCCATTGATAGGTGTTGGAGGTGTGATCCTAACTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACTACTGGTGGAAAAGACGGTCCTATCTATGTGGTAACTGACCCCTCAGATAGTGACATGGTGAATCCACGTCCTGGTACCCTTAGGCATGCAGTTACAAGAAATGGGCCTTTGTGGATCACCTTCGCTCGTAGCATGAAGATTAGGCTCAGCCAGGAGCTCATAATGGCAGGTAACAAGACCATTGATGGACGAGGAGCTGATGTTACCATTGCTAATGGTGCTGGTATTACTATCCAGTTCATCGAGAATGTGATCATCCATGGGATCAAAATTTATGACATTATGGTTGGAAGTGGTGGACTTGTTAGAGATAGTGAGGACCATTATGGTCTAAGGACTATTAGTGATGGTGATGGAATTTCAATATTTGGCTCAAGCCATATTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATGGGATCCACTGCGATTACCATCTCCAATAGTCATTTCGAAAATCACAATGAGGTAATGTTGTTTGGTGCAAGTGATAGTTATGACGGTGATCAGAAAATGCAGATCACGGTTGCATTCAATCGCTTTGGTAAGAGATTAATTCAAAGGATGCCAAGGTGTAGATTTGGTTTTATCCATGTGCTTAATAATTTCTACAATCGCTGGGAAATGTATGCCATTGGTGGCACCATGCATCCTACCATTATTAGTGAGGGTAACAAATTCATAGCCCCTAACAATGGCCATGCTAAAGAGATAACAAAGAGGACGTTAGTACCAGAGGCAGTGTGGAAAACCTGGCAATGGAGATCAATCAACGACATGTACCTGAACGGAGCATTTTTCAGACAAAGCGGAGCTGAGCTGACTAACAGACCATTCTCAAATAAGGACATGATCAAAGCTAAGCCTGGAACTTATGTTGGAAGGCTTACTCGTTATTCTCGCAGCCTTAGATGCAGGGTGGGGAAGCCTTGTTAA 1350 0.4296 MAKLYHLFLLTCLVVTISTLVHANVKEDKAYWDRILPTLNTTYWQKKASIAAKANDKAYTPDPYAVSGNLSSTVSEMIIGGNNGRRNLVGLGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDMVNPRPGTLRHAVTRNGPLWITFARSMKIRLSQELIMAGNKTIDGRGADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSSHIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFENHNEVMLFGASDSYDGDQKMQITVAFNRFGKRLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAPNNGHAKEITKRTLVPEAVWKTWQWRSINDMYLNGAFFRQSGAELTNRPFSNKDMIKAKPGTYVGRLTRYSRSLRCRVGKPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01797 449 Gene3D - 99 441 IPR012334 -
Mepo5g01797 449 Pfam Pectate lyase 185 365 IPR002022 -
Mepo5g01797 449 SUPERFAMILY Pectin lyase-like 100 437 IPR011050 -
Mepo5g01797 449 PANTHER PECTATE LYASE 18-RELATED 51 447 IPR045032 GO:0030570
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Mepo5g01797 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Mepo5g01797 449 SMART amb_all 174 371 IPR002022 -
Mepo5g01797 449 Pfam Pectate lyase, N terminus 43 88 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01797 Mepo-Chr5 19380130 19382264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01797 42 449 Polysaccharide Lyase AT1G14420 59.198 1.92e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01797 K01728 - gmx:100796307 688.337