Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01796 ATGTTTGAGGGAAGGGGGTTCTTTTCATTTGACAAAGAACCATCCATCATGGAAAAATTGTATCATCTCTTTCTTTTGACATGTTTGGTGGTAACAATATCTACATTAGTAAATGCTAATGTCAAAGAGGACAAAGCATACTGGGATAGGATAGCACCGGTGCTTAATACTACATATTGGCAGCAAAAAGCTTCAATTGCTGCAATAAAAAATGACAAAGCTTATACTCCTGACCCCTATGCAGTCTCTGGAAACCTGAGTCATAGTGTTAACGAAATGATAATTGGCGGTAACCAAGGAAGAAGGAATTTGGCCGGGCATAAAGCACGTGGTCCATGCATGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGACCCTAACTGGGCAAACAACCGCCAGAAGCTTGCAAATTGTGTGAAAGGTTTCGGAAGGAAGACTACTGGTGGAAAAGGCGGTCCTATCTATGTGGTAACCGACCCCTCAGATAGTGACATGGTAAATCCACGTCCCGGTACCCTTAGATACGCGGTTACAAGAAATGGGCCTTTGTGGATCACCTTCGCTCGTAGCATGACCATTAGGCTCAACCAAGAGCTCATAATGACAAGTCACAAGACCATTGATGGACGAGGAGCTGATGTTACCATTGCTAGTGGTGCTGGTTTTACTATCCAGTTCATCGAGAATGTGATCATCCATGGAATCAAAATTTTTGACATCGTGGTTGGAAGTGGTGGACTTATTAGAGATGGTCAGGACCATTTTGGTCAAAGGACTATGAGTGATGGTGATGGAATTTCAATTTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGTAGAGATGGACTAATTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATAGTCATTTCACAGATCACAACGAGGTGATGTTGTTTGGTGCAAGTGATGGCTATGGCGGTGATGAGAAAATGCAGATCACAGTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATTTGGTTTTATCCATGTGCTCAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGCAGCATGCATCCTACCATTATCAGTGAGGGTAACCGATTCATTGCCCCTGACAATGGCCATGCCAAAGAGATAACAAAGAGGGAGTATGTAGACGAGTCAGTGTGGAAATCCTGGCAATGGAGATCAATCAACGACGTGTACCTGAACGGAGCATTTTTCAGACAAGGTGGACCTGAGTTGAAAAACAGACCATTCTCAAGAAAGGACATGATCAAATCTAGGCCCGGAACTTATGTGGGAAGGCTTACTCGTTATGCTGGCAGCCTTAGATGCATAGTGGGGAAACCTTGCTAG 1401 0.4375 MFEGRGFFSFDKEPSIMEKLYHLFLLTCLVVTISTLVNANVKEDKAYWDRIAPVLNTTYWQQKASIAAIKNDKAYTPDPYAVSGNLSHSVNEMIIGGNQGRRNLAGHKARGPCMATNPIDRCWRCDPNWANNRQKLANCVKGFGRKTTGGKGGPIYVVTDPSDSDMVNPRPGTLRYAVTRNGPLWITFARSMTIRLNQELIMTSHKTIDGRGADVTIASGAGFTIQFIENVIIHGIKIFDIVVGSGGLIRDGQDHFGQRTMSDGDGISIFGSSNIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDGYGGDEKMQITVAFNHFGKRLIQRMPRCRFGFIHVLNNDYTHWEMYAIGGSMHPTIISEGNRFIAPDNGHAKEITKREYVDESVWKSWQWRSINDVYLNGAFFRQGGPELKNRPFSRKDMIKSRPGTYVGRLTRYAGSLRCIVGKPC 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01796 466 SUPERFAMILY Pectin lyase-like 117 457 IPR011050 -
Mepo5g01796 466 Pfam Pectate lyase, N terminus 59 104 IPR007524 GO:0030570
Mepo5g01796 466 Pfam Pectate lyase 201 382 IPR002022 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 199 215 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 437 460 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 139 156 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 365 384 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 407 431 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 163 188 IPR018082 -
Mepo5g01796 466 PRINTS Pollen allergen Amb family signature 263 284 IPR018082 -
Mepo5g01796 466 Gene3D - 116 459 IPR012334 -
Mepo5g01796 466 PANTHER PECTATE LYASE 18-RELATED 69 464 IPR045032 GO:0030570
Mepo5g01796 466 SMART amb_all 191 388 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01796 Mepo-Chr5 19371171 19378711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01796 58 466 Polysaccharide Lyase AT1G14420 61.557 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01796 K01728 - gmx:100810857 697.967