Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01789 ATGGAATCAATAAAGAAATCGTTCGAAGAATTTTACTCACACCACGCGCGAGAATCACTCGAAGAATTATCTGAAGAAATACCATTCACAATCACCGACCCATCACTTTCAAACCACCCAATAATCTTCGCTAGCCACGCGTTTCTCAACATCACTGGCTTCACGCGCGATGAAGTTCTTGGTAGAAGTGGTTCCATGTTTCAAGGTCCAGCGACATGTCGTAGGTCGGTGATGGAAATTCGTGAAGCTGTTAGGGAAGAGAGAGAAGCGAACGTTGTTTTGGTTAATTATAGAAAAAACGGCACGCCGTTTTGGGTTTTTTTGAACGTTTCTCCTGTTTTTTGTGTTAAAACTGGTGCTGTTGTTCATTTTGTTGCTGTTCAAGTTCCGTTAAAATTAAGGGTTTATGGTGGTGGTGGTGGTTCTGTTGTGGTGAATCATGATTTTATGTTTCGGTGTTGTCGGAAAGAGGTTTGTTCGGATAGTTTGGTTGAACTTCGTCGTGTTTCTTCTTCCAGGAATCAAGTGTTGGATTTGGAACATGATGATGATGATGATGTCACTGTTAAGCTCCCAACTACACTTGGAAAGCTGCACTTATTAGATTTGGAGAGTGAAGAGCCACGCGAGGCAAGTGATGATGAAAGGAGAAGTGCTGTGACTGCCATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGAAGATTGGTGTGTAGAAAGAGACGCAACAATCCTGACGTGGGTCTTCTTAGCTCTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGCTTATGCCAGTGATGCCTTCATGAAATTGACAGGTTACACGAGAGACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGACGACTCAGCTCTACAACTGATAAGGGAGAGCATCAAAACTGAAAAACTATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATATCACCTGTTCGGGATGCTACTGGAAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGCCTATAAAAACGAGGAATATAGACAGTGTTGGAAACCTGATATGAAACAGCTTAGTGTGGTTGGTGCAGTCAAGGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGTTCATCAAAGACATAG 1233 0.4209 MESIKKSFEEFYSHHARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRSGSMFQGPATCRRSVMEIREAVREEREANVVLVNYRKNGTPFWVFLNVSPVFCVKTGAVVHFVAVQVPLKLRVYGGGGGSVVVNHDFMFRCCRKEVCSDSLVELRRVSSSRNQVLDLEHDDDDDVTVKLPTTLGKLHLLDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRRNNPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIAYASDAFMKLTGYTRDEVLGRNCRFLGGRNTDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKVAYFVGVQIEDAYKNEEYRQCWKPDMKQLSVVGAVKVAVRSLSMSAGSSKT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01789 410 SUPERFAMILY PYP-like sensor domain (PAS domain) 271 367 IPR035965 -
Mepo5g01789 410 SMART pas_2 18 89 IPR000014 -
Mepo5g01789 410 SMART pas_2 256 325 IPR000014 -
Mepo5g01789 410 FunFam Protein TWIN LOV 1 isoform D 28 232 - -
Mepo5g01789 410 PANTHER PROTEIN TWIN LOV 1 2 400 - -
Mepo5g01789 410 ProSiteProfiles PAS repeat profile. 281 303 IPR000014 -
Mepo5g01789 410 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 127 IPR035965 -
Mepo5g01789 410 NCBIfam PAS domain S-box protein 281 369 IPR000014 -
Mepo5g01789 410 NCBIfam PAS domain S-box protein 39 115 IPR000014 -
Mepo5g01789 410 FunFam protein TWIN LOV 1 268 405 - -
Mepo5g01789 410 Gene3D PAS domain 9 130 - -
Mepo5g01789 410 CDD PAS 277 366 IPR000014 -
Mepo5g01789 410 Gene3D PAS domain 268 405 - -
Mepo5g01789 410 ProSiteProfiles PAS repeat profile. 16 63 IPR000014 -
Mepo5g01789 410 SMART pac_2 331 371 IPR001610 -
Mepo5g01789 410 SMART pac_2 91 134 IPR001610 -
Mepo5g01789 410 Pfam PAS domain 37 128 IPR000014 -
Mepo5g01789 410 Pfam PAS domain 268 367 IPR000014 -
Mepo5g01789 410 CDD PAS 41 114 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01789 Mepo-Chr5 19281864 19287733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01789 29 401 AGC Kinase Gene Family AT5G58140 31.358 2.41e-54 191