Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo5g01789 | ATGGAATCAATAAAGAAATCGTTCGAAGAATTTTACTCACACCACGCGCGAGAATCACTCGAAGAATTATCTGAAGAAATACCATTCACAATCACCGACCCATCACTTTCAAACCACCCAATAATCTTCGCTAGCCACGCGTTTCTCAACATCACTGGCTTCACGCGCGATGAAGTTCTTGGTAGAAGTGGTTCCATGTTTCAAGGTCCAGCGACATGTCGTAGGTCGGTGATGGAAATTCGTGAAGCTGTTAGGGAAGAGAGAGAAGCGAACGTTGTTTTGGTTAATTATAGAAAAAACGGCACGCCGTTTTGGGTTTTTTTGAACGTTTCTCCTGTTTTTTGTGTTAAAACTGGTGCTGTTGTTCATTTTGTTGCTGTTCAAGTTCCGTTAAAATTAAGGGTTTATGGTGGTGGTGGTGGTTCTGTTGTGGTGAATCATGATTTTATGTTTCGGTGTTGTCGGAAAGAGGTTTGTTCGGATAGTTTGGTTGAACTTCGTCGTGTTTCTTCTTCCAGGAATCAAGTGTTGGATTTGGAACATGATGATGATGATGATGTCACTGTTAAGCTCCCAACTACACTTGGAAAGCTGCACTTATTAGATTTGGAGAGTGAAGAGCCACGCGAGGCAAGTGATGATGAAAGGAGAAGTGCTGTGACTGCCATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGAAGATTGGTGTGTAGAAAGAGACGCAACAATCCTGACGTGGGTCTTCTTAGCTCTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGCTTATGCCAGTGATGCCTTCATGAAATTGACAGGTTACACGAGAGACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGACGACTCAGCTCTACAACTGATAAGGGAGAGCATCAAAACTGAAAAACTATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATATCACCTGTTCGGGATGCTACTGGAAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGCCTATAAAAACGAGGAATATAGACAGTGTTGGAAACCTGATATGAAACAGCTTAGTGTGGTTGGTGCAGTCAAGGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGTTCATCAAAGACATAG | 1233 | 0.4209 | MESIKKSFEEFYSHHARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRSGSMFQGPATCRRSVMEIREAVREEREANVVLVNYRKNGTPFWVFLNVSPVFCVKTGAVVHFVAVQVPLKLRVYGGGGGSVVVNHDFMFRCCRKEVCSDSLVELRRVSSSRNQVLDLEHDDDDDVTVKLPTTLGKLHLLDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRRNNPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIAYASDAFMKLTGYTRDEVLGRNCRFLGGRNTDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKVAYFVGVQIEDAYKNEEYRQCWKPDMKQLSVVGAVKVAVRSLSMSAGSSKT | 410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo5g01789 | 410 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 271 | 367 | IPR035965 | - | |
| Mepo5g01789 | 410 | SMART | pas_2 | 18 | 89 | IPR000014 | - | |
| Mepo5g01789 | 410 | SMART | pas_2 | 256 | 325 | IPR000014 | - | |
| Mepo5g01789 | 410 | FunFam | Protein TWIN LOV 1 isoform D | 28 | 232 | - | - | |
| Mepo5g01789 | 410 | PANTHER | PROTEIN TWIN LOV 1 | 2 | 400 | - | - | |
| Mepo5g01789 | 410 | ProSiteProfiles | PAS repeat profile. | 281 | 303 | IPR000014 | - | |
| Mepo5g01789 | 410 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 28 | 127 | IPR035965 | - | |
| Mepo5g01789 | 410 | NCBIfam | PAS domain S-box protein | 281 | 369 | IPR000014 | - | |
| Mepo5g01789 | 410 | NCBIfam | PAS domain S-box protein | 39 | 115 | IPR000014 | - | |
| Mepo5g01789 | 410 | FunFam | protein TWIN LOV 1 | 268 | 405 | - | - | |
| Mepo5g01789 | 410 | Gene3D | PAS domain | 9 | 130 | - | - | |
| Mepo5g01789 | 410 | CDD | PAS | 277 | 366 | IPR000014 | - | |
| Mepo5g01789 | 410 | Gene3D | PAS domain | 268 | 405 | - | - | |
| Mepo5g01789 | 410 | ProSiteProfiles | PAS repeat profile. | 16 | 63 | IPR000014 | - | |
| Mepo5g01789 | 410 | SMART | pac_2 | 331 | 371 | IPR001610 | - | |
| Mepo5g01789 | 410 | SMART | pac_2 | 91 | 134 | IPR001610 | - | |
| Mepo5g01789 | 410 | Pfam | PAS domain | 37 | 128 | IPR000014 | - | |
| Mepo5g01789 | 410 | Pfam | PAS domain | 268 | 367 | IPR000014 | - | |
| Mepo5g01789 | 410 | CDD | PAS | 41 | 114 | IPR000014 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo5g01789 | Mepo-Chr5 | 19281864 | 19287733 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo5g01789 | 29 | 401 | AGC Kinase Gene Family | AT5G58140 | 31.358 | 2.41e-54 | 191 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo5g01789 | - | - | gmx:100799855 | 473.396 |