Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01758 ATGCAACAAAAGAATATCGAGAAATTTCAAGGTTCGAGAATGTATGAGTGTGAGTTGTGTGGCAAAAGGTTCAACTCTGGCAACGCACTCGGTGGCCACAAAACATCTCACCGCCGCTCACAACCTCTAAACAAGAAACAAAGACACAGTCATGCTATTAATAAGGATGATGAGAAACATAATCATAGTTGTCATGTTTGCAACAAGGTTTTTCAATCCAAGGAGGCTTTGTGTGGACACATGAGATGTCACAAAAGAGATAGGAAGGGTATTCACCCGCCAACTTCATCATCGATTGACTTATCAAAATATTTGCCACCAATATCGTATCAGACCTATAAAGGTAGCAAGAGGAATACTGGTGTCAATTTCATTGATAAAGATGTTGCTCGAACACTCGTGCAAATATCTCATGATAATAATCATGGTGACAGTAAGAGGCTGAAACTTTCCTGTGATATGGTTAATGAGACGGTCAAGGAACAAACTGTGAAGCTAACTACTGGTCATGTTAGGGTTAATGATGAAACGGTGGTGACCGAAGAGATGGATAATAGCCGCAATAAAGAAAAGTTGGTGCCAAGTTTCAAGGTGACCAAAGAGAAAGATGACAGCGGATATAAAAGGCTCAAACTTTCAAGCAATTCTGAAGATATTGGTGACATTGATGAATCACTAGAGACCAAGGTAGAGGATAATAATGCCTCTATTGACATTGAAGAGAAGAAGAACAATAATGAATTGAAGTCAAATAGAGTTGTTATGAATTTTGATTTGAATGAGCTTCCAATGGAAGATGTTGTAGATGAGTGA 813 0.3862 MQQKNIEKFQGSRMYECELCGKRFNSGNALGGHKTSHRRSQPLNKKQRHSHAINKDDEKHNHSCHVCNKVFQSKEALCGHMRCHKRDRKGIHPPTSSSIDLSKYLPPISYQTYKGSKRNTGVNFIDKDVARTLVQISHDNNHGDSKRLKLSCDMVNETVKEQTVKLTTGHVRVNDETVVTEEMDNSRNKEKLVPSFKVTKEKDDSGYKRLKLSSNSEDIGDIDESLETKVEDNNASIDIEEKKNNNELKSNRVVMNFDLNELPMEDVVDE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01758 270 SUPERFAMILY beta-beta-alpha zinc fingers 11 43 IPR036236 -
Mepo5g01758 270 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Mepo5g01758 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 266 IPR044653 GO:0003700
Mepo5g01758 270 Gene3D Classic Zinc Finger 8 92 - -
Mepo5g01758 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Mepo5g01758 270 SMART c2h2final6 15 37 IPR013087 -
Mepo5g01758 270 SMART c2h2final6 62 84 IPR013087 -
Mepo5g01758 270 MobiDBLite consensus disorder prediction 28 59 - -
Mepo5g01758 270 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Mepo5g01758 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Mepo5g01758 270 Pfam C2H2-type zinc finger 62 86 - -
Mepo5g01758 270 Pfam C2H2-type zinc finger 15 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01758 Mepo-Chr5 18867173 18867985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01758 12 85 C2H2 Transcription Factor Family AT2G37430 39.189 1.61e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g01758 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01758 - - cam:101497742 126.716