Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01721 ATGGATCCAGCTTATCCCCTACCAGAGATCTGGCAGTCCAGAAGACCTCAGTTTAGCCCCAGCTTCGGAGATTTTTCAATGGAAGATCTCGAACAGAAAGTACTGAACCATGGCCGGAAAAATAGAACAGAGACGAAGGAAGATTCCGTTAAATGCGTTTCTACCAGCAATGGTGGTGGCCATGGCAATTCCAACGGCGTGAATGATGATGGTGGTGATGGTGACGGAAAAAGGAGTAAGACATCAGGGAACAGTAAAGGAGAAGAAATCAGTTCAGGAAAGCATGCGGAAGAAACAAGTGATGAGCCACATCCTAAGAAAGACTACATCCATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATTCAATCACTTCACCACCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGACCGACACCTGGTATTGAAGTGTTTCCTCCTAAAACTTTTGATCAGCAAACATATGATACAACCACCATGCCATTTGCTTCACAAGCTACAAGAGAGTATAGCCGAGGTGCATCACCGGAGTGGTTACATATGCAGCTGGGAGGTGGTTTTGAAAGAACAGCATAA 720 0.4375 MDPAYPLPEIWQSRRPQFSPSFGDFSMEDLEQKVLNHGRKNRTETKEDSVKCVSTSNGGGHGNSNGVNDDGGDGDGKRSKTSGNSKGEEISSGKHAEETSDEPHPKKDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRPTPGIEVFPPKTFDQQTYDTTTMPFASQATREYSRGASPEWLHMQLGGGFERTA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01721 239 MobiDBLite consensus disorder prediction 71 108 - -
Mepo5g01721 239 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Mepo5g01721 239 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 209 IPR024097 GO:0006355
Mepo5g01721 239 Gene3D - 115 187 IPR036638 GO:0046983
Mepo5g01721 239 SMART finulus 124 174 IPR011598 GO:0046983
Mepo5g01721 239 CDD bHLH_AtBPE_like 108 193 - -
Mepo5g01721 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Mepo5g01721 239 MobiDBLite consensus disorder prediction 1 108 - -
Mepo5g01721 239 FunFam Basic helix-loop-helix transcription factor 115 187 - -
Mepo5g01721 239 MobiDBLite consensus disorder prediction 50 64 - -
Mepo5g01721 239 MobiDBLite consensus disorder prediction 30 49 - -
Mepo5g01721 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01721 Mepo-Chr5 18489220 18493339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01721 1 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.381 6.25e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g01721 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01721 - - psat:127119455 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01721 5 18489220 18493339 Mepo5g01721 5 18489220 18493339 ECH
Mepo5g01721 5 18489220 18493339 Mepo5g01721 5 18489220 18493339 PCT