Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01699 ATGAAGCGGTCACGTGACGACGGTTTCATGAGTTCATCTCAACTCAAACGACCTATGCTGAATACTTCCAGAGGAGAAGCGTCCGGGCAACCGCCGAATCGAGGTGGTCAAAAACTGACTACTAATGATGCCTTAGCATATCTCAAGGCGGTCAAGGATATATTTCAAGATAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTTTAAAGCACAAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGAGGTCATAGAGACTTGATCTTGGGATTTAACACCTTTTTGCCGAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACCAAAAAAGAAGGTTGAATTTGATGAAGCTATGAGTTATGTGAACACGATAAAGACTCGGTTTCAGGGCGATGTTCATGTTTACAAGTCATTTCTGGACATATTGAATACGTACAGAAAGGAAAGTAAGCCTATCACCCTGGTCTACACAGAGGTTGCTGCACTCTTCCAAAACCACCCGGATCTTCTTGAAGGGTTTATTCATTTTCTTCCAGAAGCCACCACAGCTGCATCTACTCATGCTTTTGCTCGGAATTCCATGTTTCGTGATAGGAGCTCTGCAATGCCAACACTACGGCGAGTGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACATGGTGACCGTGACCCCAGTGTTGATCGTCCTGACCAAGATCACGATGGAGGTTCGTTGAGGGCAGAAAAGGAGCGTAAGAGACGCATGGAGAAGGAAAAGGACCGTAGAGAAGATAGAGGCAGGAGAGAACGGGAACGAGATTATGAGCACGACAGGGGTCGAGATAGGGAAAGGTTATCCCACAAATGGAAATCTGATCATAAGGCTGAAGACTCAGGAGCTGAACCATTGCTTGATGCGGATCAAAATTTCGGTATGCACCCTATGTCATCCACTTGTGATGATAAACATTCTCTTAAAAGTACGCGTAGCCAGGAGTTAGCTTTCTGTGATAAAGTCAAAGAGAGATTACGAAATCCTGTCGACTACCAGGAGTTTTTGAAGTGTGTACATATTTACAACAAGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGGTTCTGGTTTATTGGGAGACTATCCAGATCTTATGGAAAGTTTTAATGAATTTTTGTTGCAAGCTGAGAAGAATGGTGGTGGATTCCTTGCTGGCGTCATGAATAGAAAGTCCTTATGGATTGAAGGACGTGGACTGAAACCAATGAATGCTGAACAGAGGGATAGAGATAGGGATGATGATAGGGATCTTTACAGGGATAATGAGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTCCCATGATCAACAAGGATGTTTCAGGTTCTAAGATGTCCCTATATCCCAGCAAGGATAAGTATCTCTCAAAGCCAATAAATGAGCTGGACCTTTCTAACTGTGAGCGATGCACTCCTAGTTACCGCCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAAAACAGATCTTGGTGCAGAAGTGTTGAATGATCACTGGGTGTCAGTCACTTCAGGAAGTGAGGATTACTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAAAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGGTAGAGTCTGTAAGCGCGACAACCACACGAGTAGAAGAGCTGTTAGAAGTGATCAGCAAAAATCCAATTAAAGGAGACAGCCCTATTTGTATTGAGGAGCACTTAACAGCTCTAAATTTCAGGTGTATTGAACGGATATATGGTGATCATGGTCTTGATGTTTTGGAAGTACTAAGGAAGAAACCATCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCTGATTTCAGTAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACACAAGGAGCTTGAGCACCAAAGCTCTACTGGCTGAAATCAAAGAAGTCAGTGAGAAGAAACACAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGTAATAGACGGCCTATTCTTCCAAACCTGGAGTTTGAGTACATTGATCCAGACATCCATGAAGATTTGTATCGGCTTATAAAATATTCGTGTGCAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCGATGCTTTGTGTTCCTTGTCGGTCCCAGGGCGCTGAGGATACTGAAGAAGTTGTTGTGGCTAAGAATAATTCTGTGAGAAATGTTGCTGAAACTGATGGTAATCCTATTGTTGGTGCTACCATAATGAACCCAAAGCATACAAGTACTTCTAGAAATGGTGATGAGTGTGTGCCAATAGATCAGTCAACTTCTAGCAAAGCATGCAAATCAAATGGTGATACTGGGATTAGAGAAGATAAATGTCTTGATCCAGACCGTACTATGCATAAAAGTGAAATTTTTGGCAGTAATCCACAACATGGTAAACCAGATATCATTGCATTCATGCCTAATGAGCTATCAGGAGTCAATAAGCAAGATCTCTCTGGTGAGCGGTTAGTGAATGCTAATGTCTCGCCAGCATCTGGAATGGAGCTAAGTAATGGAAGAACAGAGATAGATAATGCATCAGGATTTGCTGCTACTCCATCTAGAAATGGTAATGTATCTGTCACCAGGGGACTCGAGTTACCTTCATCAGAGGGTGGTGATTCTGCTAGACTATGTGCATCCACAAATGGGGCCATCGCTGGAGGCACTGAAGTGTGCAGATACCAAGAGGAATCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAGGATAATTTTGCAGTTTATGGAGATGCTGGTTTGGATGTAGTGCATAAAGGAAATGATGGTGGTGTGAAACGGAAATATCAAAATAGACCTGGCGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATTATGCAGATGCTGATGATGAAGAAGAAGAAAGTCCTCAGAGGTCATCAGAGGGCAGTGAAAATGCTTCTGGAAACGTTGATGTTTCTGGAAGCGAATCTGCTGATGGAGAGGAATGTTCTCAAGAAGAGCATGAGGATGGAGAACATGATGATAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCACATGATGTTGAAGGAGATGGAACGTCATTGCCATTTTCTGAACGCTTTCTTCTTAATGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTGTTACATGTTGAAGACAAGAATTCTCGAGTTTTTTATGGAAATGACTCCTTCTATGTGCTGATTAGACTTCATCAGACATTGTATGAAAGGATACACGCAGCAAAGGTTAACTCATCATCCGCTGAAAGGAAATGGAGTGCTTCAAATAATACAAGCTCCACTGATCAATATGATAGGTTCATGATTGCCCTTTACAGTTTACTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGACTGTCGTGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTAGACAAACTAATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCGAGTGATGAGATGGATAATAAGCTGCTTCAACTATATGCATATGAGAAATCAAGAAAACCTGGAAAGTTTGTTGATATAGTTTATCACGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCAAAACCAAAGACATTGTCTATTCAACTCATGGACTGTGGAAATGAGAAGCATGAAGTGACTGCTGTGTTAGTGGACCCAAATTTTTCAGCCTATCTGCACAATGATTTCCTCTCTATTGTCTCTGACAAAAAGTCGGGGATTTTCTTGAAAAGGAACAAACGTGGCTACGCCTGTAGTGATGAATTTTCAAGCGAGGTTATGGAAGGACTGCAAATTATTAATGGTCTGGAGTGTAAGATAGCTTCCAATTCTTCTAAGGTGTCGTACGTTTTAGATACAGAAGACTTCTTGTTTCGGACTAGAAGCAGAAGAAAAGCATTGCATCTGAAGAGTTCATGCTATGAAGAACAAAAGCCTTCAAACATTCGTTCAAGCAGAGTAGCAAGGTTCCACAAATTGTTTTCCTTCATGTGA 4272 0.4118 MKRSRDDGFMSSSQLKRPMLNTSRGEASGQPPNRGGQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIERVKELFRGHRDLILGFNTFLPKGHEITLSSEDEQPQPKKKVEFDEAMSYVNTIKTRFQGDVHVYKSFLDILNTYRKESKPITLVYTEVAALFQNHPDLLEGFIHFLPEATTAASTHAFARNSMFRDRSSAMPTLRRVHVEKRERTIVSHGDRDPSVDRPDQDHDGGSLRAEKERKRRMEKEKDRREDRGRRERERDYEHDRGRDRERLSHKWKSDHKAEDSGAEPLLDADQNFGMHPMSSTCDDKHSLKSTRSQELAFCDKVKERLRNPVDYQEFLKCVHIYNKEIITRQELQSLVGGSGLLGDYPDLMESFNEFLLQAEKNGGGFLAGVMNRKSLWIEGRGLKPMNAEQRDRDRDDDRDLYRDNEMKERDREFRERDKSPMINKDVSGSKMSLYPSKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASQKTDLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLVESVSATTTRVEELLEVISKNPIKGDSPICIEEHLTALNFRCIERIYGDHGLDVLEVLRKKPSLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTRSLSTKALLAEIKEVSEKKHKEDDVLLAIAAGNRRPILPNLEFEYIDPDIHEDLYRLIKYSCAEVCTTEQLDKVMKIWTTFLEPMLCVPCRSQGAEDTEEVVVAKNNSVRNVAETDGNPIVGATIMNPKHTSTSRNGDECVPIDQSTSSKACKSNGDTGIREDKCLDPDRTMHKSEIFGSNPQHGKPDIIAFMPNELSGVNKQDLSGERLVNANVSPASGMELSNGRTEIDNASGFAATPSRNGNVSVTRGLELPSSEGGDSARLCASTNGAIAGGTEVCRYQEESNRQFKSEREEGELSPNGDFEEDNFAVYGDAGLDVVHKGNDGGVKRKYQNRPGEEVCGEARGENYADADDEEEESPQRSSEGSENASGNVDVSGSESADGEECSQEEHEDGEHDDKAESEGEAEGMADAHDVEGDGTSLPFSERFLLNVKPLAKHVPPVLHVEDKNSRVFYGNDSFYVLIRLHQTLYERIHAAKVNSSSAERKWSASNNTSSTDQYDRFMIALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPKPKTLSIQLMDCGNEKHEVTAVLVDPNFSAYLHNDFLSIVSDKKSGIFLKRNKRGYACSDEFSSEVMEGLQIINGLECKIASNSSKVSYVLDTEDFLFRTRSRRKALHLKSSCYEEQKPSNIRSSRVARFHKLFSFM 1423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 218 308 - -
Mepo5g01699 1423 Pfam C-terminal domain of Sin3a protein 1139 1383 IPR031693 -
Mepo5g01699 1423 Gene3D Paired amphipathic helix 122 194 IPR036600 GO:0006355
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 1 39 - -
Mepo5g01699 1423 Pfam Sin3 family co-repressor 499 589 IPR013194 -
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 1009 1033 - -
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 431 473 - -
Mepo5g01699 1423 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Mepo5g01699 1423 PANTHER SIN3B-RELATED 38 1283 IPR039774 GO:0003714
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 431 468 - -
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 1078 1100 - -
Mepo5g01699 1423 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Mepo5g01699 1423 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 809 839 - -
Mepo5g01699 1423 SUPERFAMILY PAH2 domain 36 106 IPR036600 GO:0006355
Mepo5g01699 1423 SMART hdac_interact2seq4b 497 597 IPR013194 -
Mepo5g01699 1423 FunFam Paired amphipathic helix protein SIN3 330 405 - -
Mepo5g01699 1423 Gene3D Paired amphipathic helix 330 404 IPR036600 GO:0006355
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 1009 1106 - -
Mepo5g01699 1423 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Mepo5g01699 1423 SUPERFAMILY PAH2 domain 120 191 IPR036600 GO:0006355
Mepo5g01699 1423 ProSiteProfiles PAH domain profile. 332 403 IPR003822 GO:0006355
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 970 992 - -
Mepo5g01699 1423 SUPERFAMILY PAH2 domain 331 400 IPR036600 GO:0006355
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 218 331 - -
Mepo5g01699 1423 Coils Coil 252 272 - -
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 1049 1063 - -
Mepo5g01699 1423 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Mepo5g01699 1423 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Mepo5g01699 1423 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Mepo5g01699 1423 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 14 39 - -
Mepo5g01699 1423 MobiDBLite consensus disorder prediction 804 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01699 Mepo-Chr5 18195541 18208957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01699 9 133 WRKY Transcription Factor Family AT4G12020 50.000 1.45e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo5g01699 Sin3a_C 2.2e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01699 K11644 - gmx:100811928 2120.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01699 5 18195541 18208957 Mepo5g01699 5 18195541 18208957 ECH
Mepo5g01699 5 18195541 18208957 Mepo1g02726 1 28784251 28804471 PCT