Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01612 ATGCATTTTTTTCACTCTCAAATCCACAATAACAATGGTGCTATCACAAACCCTTCAATTATATCTCCATTTTCTTCAATTCCTTATGATTCAAACAACCAGAAAAATTCAGAACCAACCCAAATTTCTTCATCTTCTAGTAACAAAATAAACCCTGCAATACTTTTCATCATAGTTATATTAGCTATAATATTTTTCATCTTAGGTTTTCTTCATTTACTTGTAAGATTTCTCATAAAGCATAGATCTTCATCATCATCATCAACAACAACAATTTCTCAATCAAATAGATTTCCAGAAATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAGCTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCACTTCCTGTTTTCATTTACAAAGACATAATTGGTTTGAAAGAGCAATTTGATTGTGCTGTTTGTTTATGTGAGTTTTTGGAACAAGATAAGTTAAGATTGTTACCAAATTGTAACCATGCTTTTCATATTAGTTGTATAGATACATGGTTATTGTCAAATTCATCTTGTCCTTTATGTAGAGGTACCCTTTATTCACAAGGGTTTTCTTTTGATAAAAATCCTGTTTTTGAGTTTGAGGATCAAAGGGATGAAGAATTTGTTATAGGTATTGGTTCAGTTAACAAGGATATGGGAAATCATATAATGAATGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGTTCAAATAATGAAGAAGGGGGTGCAAAAAGTGAAGGAGAGAGTAGTAATTGTAATTTTGATGTTAGGAGATGTTATTCAATGGGGTCTTTTCAATATGTTGTTGCTGATTCAGATTTGCAAGTTGCTTTGAAAGCTTCTAAGGGTGATGGTAGTATGAGACAATTGAAGGGAATTAGAGAAATTCAAGATGGTGATGTTGAAGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATTTGGCAATGGTCTAAGAAAGATAGTAAGATACCAAGTTCATCTGATACACATTTTCATAATTGTGTTGCCAATGAAAGTTTGCCATGGATGAATAAAGCTAGAGGTACATGA 1104 0.3225 MHFFHSQIHNNNGAITNPSIISPFSSIPYDSNNQKNSEPTQISSSSSNKINPAILFIIVILAIIFFILGFLHLLVRFLIKHRSSSSSSTTTISQSNRFPEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKDIIGLKEQFDCAVCLCEFLEQDKLRLLPNCNHAFHISCIDTWLLSNSSCPLCRGTLYSQGFSFDKNPVFEFEDQRDEEFVIGIGSVNKDMGNHIMNGKRVFSVRLGKFRSSNNEEGGAKSEGESSNCNFDVRRCYSMGSFQYVVADSDLQVALKASKGDGSMRQLKGIREIQDGDVEGKKINIARKGESFSVSKIWQWSKKDSKIPSSSDTHFHNCVANESLPWMNKARGT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01612 367 SUPERFAMILY RING/U-box 126 195 - -
Mepo5g01612 367 Pfam Ring finger domain 146 189 IPR001841 -
Mepo5g01612 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 332 - -
Mepo5g01612 367 FunFam RING-H2 finger protein ATL46-like 122 194 - -
Mepo5g01612 367 SMART ring_2 147 188 IPR001841 -
Mepo5g01612 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Mepo5g01612 367 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Mepo5g01612 367 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01612 Mepo-Chr5 17100215 17101658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01612 69 345 C3H Transcription Factor Family AT2G18650 38.608 1.19e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01612 - - tpra:123906744 481.485