Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01557 ATGGAAGAAATGTACGGAGTACCAACAACTGTGGAATACGGCGACAAATCTCTGATGACACCGGAGAATCTAATCTTCCCAACTGACTACAACAGTTTCCTCATGTCCACCACTTCATCAACCAACCGAATTCCTATGTTCGGATCCAACGATATCTTCACGGCGGCGGAAACTTCTTCCGCCGTCGGAATTCAAGATGACGTGGCATCTAATATCATGAAAGCTAAAATTGCTTCTCATCCTTATTACCCTCGTCTCCTTCAAGCTTATATCGATTGTCAAAAGGTTGGTGCTCCTCCTGAAATTGCAAGTTTATTGGAAGAGATTCGAAGAGAAAACGATATGTGTAAAAGAGACGTTGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAAGTTATTGTGACATGCTTGTGAAGTATAAATCAGACCTTACTCGACCTTTTGACGAAGCTACAACGTTTCTGAACAAGATCGAAACTCAACTCAGTCATCTCTGCACTGGTGCTGCTACTGCTGCTGCTGCTGCTTCAGTTCCAACTGCTTCTGATGATGGTGGTGCATCTTCAGACGAAGATCTTAGTACAGGAGATGGTGATGTTCAAGATGGACAATTAAGGGGAGAAGATCGTGAGCTCAAAGATAGGCTTTTACGCAAATTTGGAAGTCATATTGGCACTTTGAAATTGGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCAAAAGAAGCAAGACAAACATTACTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATTTTACCGGACGGTTTCTTACTGAAGAATGA 963 0.4123 MEEMYGVPTTVEYGDKSLMTPENLIFPTDYNSFLMSTTSSTNRIPMFGSNDIFTAAETSSAVGIQDDVASNIMKAKIASHPYYPRLLQAYIDCQKVGAPPEIASLLEEIRRENDMCKRDVVVSTCFGADPELDEFMESYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGAATAAAAASVPTASDDGGASSDEDLSTGDGDVQDGQLRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLTEE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01557 320 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Mepo5g01557 320 Pfam ELK domain 217 238 IPR005539 GO:0003677
Mepo5g01557 320 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Mepo5g01557 320 SMART KNOX1_2 71 115 IPR005540 GO:0003677|GO:0005634
Mepo5g01557 320 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Mepo5g01557 320 SMART ELK_2 217 238 IPR005539 GO:0003677
Mepo5g01557 320 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Mepo5g01557 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 308 - -
Mepo5g01557 320 CDD homeodomain 249 301 IPR001356 GO:0003677
Mepo5g01557 320 SUPERFAMILY Homeodomain-like 238 311 IPR009057 -
Mepo5g01557 320 SMART HOX_1 239 304 IPR001356 GO:0003677
Mepo5g01557 320 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Mepo5g01557 320 Pfam KNOX2 domain 126 172 IPR005541 GO:0003677|GO:0005634
Mepo5g01557 320 Pfam KNOX1 domain 73 114 IPR005540 GO:0003677|GO:0005634
Mepo5g01557 320 Gene3D - 236 310 - -
Mepo5g01557 320 MobiDBLite consensus disorder prediction 183 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01557 Mepo-Chr5 16395339 16403940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01557 1 320 Homeobox Transcription Factor Family AT1G23380 63.582 1.33e-145 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo5g01557 KNOX2 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01557 - - gmx:100794719 482.641