LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo5g01548	ATGGCTTCTCTAATTCAACTTCTTTCAATTTTTCTACCTCTTCTAGCATCTTCAATACCAACTATATTTTCCATTGAAGTTTCAATGAAAAAAGCTTACATGGAGCCTTTTAAATGCTCTACAAAGATGAGAACATGCAATGCATCACTCTACCATATAAACTACAATCACAACATAGAAGAAATAGCTAATTTTTATTCTATTGATCCTTCACAAATCAAACCAATAATTCGTAGCACAAAACAAGATTACCTAGTAAAAGTGCCTTGTTCTTGCAAAAACACCAAAGATCTTAGTGGATATTTTTATGAAACAACCTACAAAGTGAGTCCTAATGAAACTTCTGTGGATGTTATGAATCTTATTTATAGTGGTCAAGCTTGGCAAGTTAACGAAGATTTGGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCAGAATTTGAGTCACAAATTGTTGTCACATATACTGTTCAGCAAAGTGATACACCAACATCAATTTCTCTTTTGCTTAATGCTACTATTGATGGCATGGTGAGAATGAACCAAATTTTGGGTCCTAACCCAACATTCATAGATATTGGTTGGGTGTTATATGTTCCTAAGGAATTAAAAGGGTCACCACTTTACCATGGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCTTAGTGAGTGTGACATTACTTTCAGTTATTACCTTGATCATTTTCATTCTAAGGAGAAATAAAGCCTATGAAACCAGCAAATATGATCCAAAAACTGTCTCTAAAAGATCATTTGGCAATAGAACTATTTCCTTAAGGAATCATGAGTTTCATAAAGAATATATGGAAGATGCAACACAATTTGATTCAGAAAGACCAGTAATTTATGATTTTGAGGAGATTGAACATGCTACAAATAACTTTGATGAAACTAGAAGGATTGGAGTTGGTGGATATGGTACTGTCTATTTTGGAATGCTAGAGGAGAAAGAGGTTGCTGTGAAGAAAATGAAGTCTAACAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATCAATATTGTGGAGTTGCTAGGATATGCTAGTGGAGATGATCACCTTTATTTGGTGTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCTCTATTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCAAGAACTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACATGATTACACAAAAGCGCGATATGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTGCGAGCCAAGGTAGCGGATTTCGGACTTGCAAAGCTAGTCGAAAGAACCAATGATGAAGAATTTTTAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTAACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTGTGTCTGAATTGATAACAGGGAAACGTGCATTATTTCGTGACAACAAAGAAACTAATAGTATGAAATCACTTATTGCAGTTGTTTACAAAATATTCCAAGATGAGGACCCGGTTGCTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCTACGTAATTATCCTATAGAAGGTGTCTACAAGATGGCAGAATTATCACATTGGTGTTTGAGTGAAGAACCAGTGGACAGGCCTGAAATGAAAGAGATCGTTGTGGCAGTGTCAAAGATTGTAATGTCTTCAATAGAATGGGAAGCATCACTAGGTGGGGACAGTCAGGTGCAAGAGCCTGAGCCCCGACATCACCATGTTGAGGAGGAGGAAAAGGTTGATGATTTAGACAATTCAGAAGAGGCATCGAATGCTGATGATGATGAGCAGCCACAACAGGCCAAGGAGGAGGAGCCACAATTACTAGATCACTATCATGGTGGTCCATATGATGTGTATGTGCTTACTTAG	1995	0.3694	MASLIQLLSIFLPLLASSIPTIFSIEVSMKKAYMEPFKCSTKMRTCNASLYHINYNHNIEEIANFYSIDPSQIKPIIRSTKQDYLVKVPCSCKNTKDLSGYFYETTYKVSPNETSVDVMNLIYSGQAWQVNEDLVANENVTIHIPCGCSEFESQIVVTYTVQQSDTPTSISLLLNATIDGMVRMNQILGPNPTFIDIGWVLYVPKELKGSPLYHGKEKKHKWVIIIGILVSVTLLSVITLIIFILRRNKAYETSKYDPKTVSKRSFGNRTISLRNHEFHKEYMEDATQFDSERPVIYDFEEIEHATNNFDETRRIGVGGYGTVYFGMLEEKEVAVKKMKSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARTQIALDSAKGIEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVVSELITGKRALFRDNKETNSMKSLIAVVYKIFQDEDPVAALEAVVDGNLLRNYPIEGVYKMAELSHWCLSEEPVDRPEMKEIVVAVSKIVMSSIEWEASLGGDSQVQEPEPRHHHVEEEEKVDDLDNSEEASNADDDEQPQQAKEEEPQLLDHYHGGPYDVYVLT	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo5g01548	664	MobiDBLite	consensus disorder prediction	636	652	-	-
	Mepo5g01548	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	428	440	IPR008271	GO:0004672\|GO:0006468
	Mepo5g01548	664	ProSitePatterns	Protein kinases ATP-binding region signature.	315	337	IPR017441	GO:0005524
	Mepo5g01548	664	SMART	serkin_6	309	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo5g01548	664	MobiDBLite	consensus disorder prediction	606	620	-	-
	Mepo5g01548	664	ProSiteProfiles	Protein kinase domain profile.	309	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo5g01548	664	SUPERFAMILY	LysM domain	157	204	IPR036779	-
	Mepo5g01548	664	ProSiteProfiles	LysM domain profile.	157	203	IPR018392	-
	Mepo5g01548	664	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	35	605	IPR044812	GO:0019199\|GO:0045087
	Mepo5g01548	664	Pfam	Protein kinase domain	310	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo5g01548	664	SUPERFAMILY	Protein kinase-like (PK-like)	293	583	IPR011009	-
	Mepo5g01548	664	FunFam	Kinase family protein	285	380	-	-
	Mepo5g01548	664	Gene3D	LysM domain	152	209	IPR036779	-
	Mepo5g01548	664	Gene3D	Phosphorylase Kinase; domain 1	287	380	-	-
	Mepo5g01548	664	MobiDBLite	consensus disorder prediction	599	658	-	-
	Mepo5g01548	664	Gene3D	Transferase(Phosphotransferase) domain 1	381	599	-	-
	Mepo5g01548	664	FunFam	PTI1-like tyrosine-protein kinase 3	381	599	-	-
	Mepo5g01548	664	MobiDBLite	consensus disorder prediction	621	635	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo5g01548	Mepo-Chr5	16271281	16280502	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo5g01548	289	605	Receptor kinase-like Gene Family	AT1G51940	51.084	5.82e-113	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Mepo5g01548		Pkinase	9.3e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo5g01548	-		-	gmx:100800907	892.878