Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01521 ATGGATTTTGATGAAGATCAAGAAGAGGAACAAGATGAAGAGTTATGTATGGGTGGAGGAAATTACGACTCTTTACCTAACTCATCAAGAGTTGTTAAGATGCCTGGTGGAACTGAACCTATCATGGTGACTCATCCACTCAGAAACATCCTCAACAACAACAACAACAACAATGGAAACAGCAACATGGTTGGTGTTGGAAATGGAAAAGCAAGGTATAGAGAGTGTCTGAAGAATCATGCGGTAGGTATTGGTGGTCATGCTCTTGATGGTTGCGGTGAGTTTATGCCGGCAGGAAGTGAAGGAACTTTGGAGTCACTAAAATGTGCTGCTTGTAACTGTCACCGTAACTTCCACCGAAAAGAGTCATCGGCAGATGTTACTGCCGGTGACCCTTTTCTGTTGACAAACCATCATCACCATCCACCACCTCCACCGCAGTTCGCGGCATATTATCGAACTCCAGCGGGGTATTTGCATGTTTCTGGACAGCAGAGGACTGGGACACTTGCTTTGCCGTCTACTTCTGGTGGCGGTGGAGGGACGCAGAGTACGAGGGAAGAGCTTGAAGATGTTTCGAATCCAAGTGGCGGTGGAAGTGGTTCAAGTAAGAAGAGGCATAGGACAAAATTCACGCAGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGTAATGAAAGTGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 804 0.4502 MDFDEDQEEEQDEELCMGGGNYDSLPNSSRVVKMPGGTEPIMVTHPLRNILNNNNNNNGNSNMVGVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLESLKCAACNCHRNFHRKESSADVTAGDPFLLTNHHHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREELEDVSNPSGGGSGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01521 267 NCBIfam homeobox domain, ZF-HD class 204 260 IPR006455 -
Mepo5g01521 267 SUPERFAMILY Homeodomain-like 194 265 IPR009057 -
Mepo5g01521 267 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 122 IPR006456 -
Mepo5g01521 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 263 - -
Mepo5g01521 267 MobiDBLite consensus disorder prediction 1 16 - -
Mepo5g01521 267 Gene3D - 190 264 - -
Mepo5g01521 267 MobiDBLite consensus disorder prediction 168 212 - -
Mepo5g01521 267 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 72 122 IPR006456 -
Mepo5g01521 267 FunFam Zinc-finger homeodomain protein 2 191 265 - -
Mepo5g01521 267 Pfam ZF-HD protein dimerisation region 71 123 IPR006456 -
Mepo5g01521 267 MobiDBLite consensus disorder prediction 1 24 - -
Mepo5g01521 267 MobiDBLite consensus disorder prediction 168 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01521 Mepo-Chr5 15894048 15895383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01521 69 263 ZF-HD Transcription Factor Family AT4G24660 52.821 2.63e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo5g01521 ZF-HD_dimer 8.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01521 - - gmx:100808910 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01521 5 15894048 15895383 Mepo1g02438 1 25410254 25411244 PCT