Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01517 ATGGTTCGTGAGAAGATTCAGATAAAGAAGATTGAAAACTCAACGGCGAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGATTAATCAAAAAGGCTGAAGAACTTTCAGTTCTGTGTGATGCTGATGTTGCTCTCATTGTTTTCTCTTCTACTGGCAAACTCTTTGAATACTCTAACTCAAGCATGAGGGAAATACTTGAAAGACATCATTTGCACTCAAAGAATCTGGCAAAGCTGGAAGAACCGTCACTAGAGTTGCAGCTAGTTGAAAACAGCAACTGTTGTAGATTGAGCAAGGAAGTTGCTCAGAAGAGCCATCAACTAAGGCAGATGAGAGGAGAGGATCTCCAAGGTTTGAGTCTGGAAGAATTACATCAATTGGAGAAGTCTCTTGAAATTGGGTTGGGCCGTGTAATTGAAACCAAGGGAGAGAAGATTATGATGGAGATCAATGAGCTTCAAACAAAGGGAAGACAACTGATGGAAGAGAACAACCGACTAAAACGACATGTGTCAGGCATGTTTAATGGTAAAATGTTTGGAGGAGTTGAATCTGAGAACGTGGTTATTGAAGAAGGTCAATCTTCAGAATCGGTCACCAATGTTTACAACTCTACCGGTCCTCCCCAGGATTATGAGAGCTCAGACACCTCGCTCAAATTGGGGCTTCCGTATGCCGGCTGA 684 0.4225 MVREKIQIKKIENSTARQVTFSKRRRGLIKKAEELSVLCDADVALIVFSSTGKLFEYSNSSMREILERHHLHSKNLAKLEEPSLELQLVENSNCCRLSKEVAQKSHQLRQMRGEDLQGLSLEELHQLEKSLEIGLGRVIETKGEKIMMEINELQTKGRQLMEENNRLKRHVSGMFNGKMFGGVESENVVIEEGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYAG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01517 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Mepo5g01517 227 FunFam Transcription factor, MADS-box 13 83 - -
Mepo5g01517 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mepo5g01517 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo5g01517 227 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Mepo5g01517 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 MobiDBLite consensus disorder prediction 199 227 - -
Mepo5g01517 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 MobiDBLite consensus disorder prediction 199 217 - -
Mepo5g01517 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo5g01517 227 Coils Coil 150 170 - -
Mepo5g01517 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g01517 227 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01517 Mepo-Chr5 15823921 15830201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01517 1 227 MADS-box Gene Family AT2G22540 70.000 9.31e-113 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo5g01517 K-box 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01517 - - gmx:100789126 372.474