Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01508 ATGCAGCATGTTCGAAATTACTATAACGGAGAAGCTCAAATGCTAAGAAGCAACTTTCCAAGTTCATTCATCTCGCAAACATTCAAAAGCAGTTTCTCGAAGCAAAGATCAAAGGCAGAGAACAAATTACTGGCAGCTAAGAAACATAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCAGTATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAATACTAGTGGAGACTATCAAACAAGTGAAGGAGTTGAAGAAAAAAGCATCAAAGCTAGAAGAAGATAGCCATGGTACCTCAAAGGAGATCAAGTTTCCTAGTGGGGCAGACAAATTGAATTTGGAAAAGTGTAATGATGAGGAGGGTCTAGTAAAAGCTACATTGAGTTGTGAGGATAGACCAGGATTGATGTCATCTATATCAAGAGCACTTTTGTCAATGAAAGCCAAAGTTGTTAAGGTTGAGATGATGACAGTGGGTGGAAGAACCAGAAGTGTGTTATGGGTGCAAGGTGTTGAAAATGAAGGTTTGGGAATGCTCAAGAGTACTTTGAAAGTTGTTATGCATAAGCCAAGCTTTAAGATGAGGCGGTATACTCAATAG 627 0.4003 MQHVRNYYNGEAQMLRSNFPSSFISQTFKSSFSKQRSKAENKLLAAKKHSEAEKRRRMRINGQYDTLRSILPNLIKKDKASILVETIKQVKELKKKASKLEEDSHGTSKEIKFPSGADKLNLEKCNDEEGLVKATLSCEDRPGLMSSISRALLSMKAKVVKVEMMTVGGRTRSVLWVQGVENEGLGMLKSTLKVVMHKPSFKMRRYTQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01508 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 108 IPR036638 GO:0046983
Mepo5g01508 208 Gene3D - 44 113 IPR036638 GO:0046983
Mepo5g01508 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Mepo5g01508 208 CDD ACT_UUR-ACR-like 135 185 - -
Mepo5g01508 208 Pfam Helix-loop-helix DNA-binding domain 48 93 IPR011598 GO:0046983
Mepo5g01508 208 Gene3D - 126 205 - -
Mepo5g01508 208 Pfam ACT domain 135 199 - -
Mepo5g01508 208 Coils Coil 83 110 - -
Mepo5g01508 208 SMART finulus 50 99 IPR011598 GO:0046983
Mepo5g01508 208 SUPERFAMILY ACT-like 133 200 IPR045865 -
Mepo5g01508 208 PANTHER TRANSCRIPTION FACTOR BHLH30 18 200 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01508 Mepo-Chr5 15750526 15751397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01508 43 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 42.754 3.37e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g01508 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01508 - - gmx:102667782 285.034