Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01478 ATGGCTCGTGCTACTACCACAAATTCAAATAATAACTGGCTATCATTTTCACTTTCACCCATGGAAATGCCTCAGTTTGTTCAATATGACCAAACTTCATCCGTTACTACTAACTCCTCTCATCAAAATCATCATCACTATTTCCTTGACAACTTGTATACTCATAATGGGTGGGGAAACGGAACCAAAGCAGAAGAACAAGAACAATCAATCTGGTTTGTGGATTCATCAAACACTGTTAACCACACTCCACCACCAAAGCTAGAAGATTTTCTAGGTGACAGTCAAACCGAAACACAAGATTCATCACTCACAAACATGTATGATCATCATCATTACTTTGGTGGGGACCACTCCCAGCACCACCACCAACACCACCACCACCAGGATCTTACTGGTTTTCAAGCTTTTTCAAACAACAACTCTGGCTCTGAAGTTGATGATTCTGGTTCCATAGGGAAATCAGGACAAGCTGCATGTGGGAATGAGTTTGGTACTACTCATTGTGTTGAGTCTGTGAATGAGTTTGCTTACTCCACCGCTGCTGCGGCAGCGGTGGGGGCTAATGGAACTCTGTCGCTCAGTGTAGCGCAGAGTTCCGAGGAAACTGCTATTGTAGCTGTTGCTGCTGATTCTGATAGCTCTAAGAAGATTGTTGATACTTTTGGTCAAAGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACAGGAAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGGGAAGGTCAAGCTAGGAAGGGGCGTCAAGTCTATTTGGGTGGATATGACAAAGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGGCCCACTGCTACTACCAACTTCCCTGTTTCCAATTATGCAAAAGAATTGGAAGAGATGAAGAATGTAACAAAGCAAGAATTCATTGCTTCATTAAGAAGGAAGAGTAGTGGCTTCTCAAGAGGAGCTTCCATCTACCGGGGTGTCACAAGGCATCACCAACAGGGTAGGTGGCAAGCGAGAATTGGCCGTGTTGCCGGGAACAAAGACTTGTATCTCGGAACATTCGCAACTGAAGAGGAAGCTGCAGAGGCCTATGACATTGCAGCCATAAAGTTCCGAGGCGCTAATGCGGTGACAAACTTTGAGATGAACAGATATGACGTGGAAGCGATAATGAAGAGCTCTCTTCCAGTTGGCGGGGCAGCTAAACGCCTGAAGCGTTCTCTAGAATCAGAACAGAAAGCTTCTGCAGAGAACAACATTCAACAGAACAACCCTCAACAAAGTGCTGCAAACTTGACTAACAGCAGCAGCAGCAACAACATCAACTTCTCGGCCATTCAACATCAGCAACCAATGGCTTCAATCCCCTATGGTATTCCGTATGACTCGAATACGGCTTACTATCATCACAACCTCTTCCAGCATTTTCATGCTAGTCCCAATGATGGCGCTGCAGAATCAGCAGCGAATGGAGGACTCAATGCCATGCCACCAACATCGGCTGAGTTCTATTTATGGCCAAATCAGTCCTATTGA 1557 0.4502 MARATTTNSNNNWLSFSLSPMEMPQFVQYDQTSSVTTNSSHQNHHHYFLDNLYTHNGWGNGTKAEEQEQSIWFVDSSNTVNHTPPPKLEDFLGDSQTETQDSSLTNMYDHHHYFGGDHSQHHHQHHHHQDLTGFQAFSNNNSGSEVDDSGSIGKSGQAACGNEFGTTHCVESVNEFAYSTAAAAAVGANGTLSLSVAQSSEETAIVAVAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKNVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKASAENNIQQNNPQQSAANLTNSSSSNNINFSAIQHQQPMASIPYGIPYDSNTAYYHHNLFQHFHASPNDGAAESAANGGLNAMPPTSAEFYLWPNQSY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01478 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 455 - -
Mepo5g01478 518 CDD AP2 329 388 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 MobiDBLite consensus disorder prediction 413 443 - -
Mepo5g01478 518 PRINTS Ethylene responsive element binding protein signature 229 240 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 PRINTS Ethylene responsive element binding protein signature 370 390 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 Pfam AP2 domain 228 286 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 Pfam AP2 domain 330 380 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 MobiDBLite consensus disorder prediction 131 151 - -
Mepo5g01478 518 SUPERFAMILY DNA-binding domain 227 296 IPR016177 GO:0003677
Mepo5g01478 518 SUPERFAMILY DNA-binding domain 329 389 IPR016177 GO:0003677
Mepo5g01478 518 SMART rav1_2 228 300 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 SMART rav1_2 330 394 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 CDD AP2 227 296 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 ProSiteProfiles AP2/ERF domain profile. 330 388 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 MobiDBLite consensus disorder prediction 420 443 - -
Mepo5g01478 518 FunFam AP2-like ethylene-responsive transcription factor ANT 227 296 - -
Mepo5g01478 518 FunFam AP2-like ethylene-responsive transcription factor 329 390 - -
Mepo5g01478 518 ProSiteProfiles AP2/ERF domain profile. 228 294 IPR001471 GO:0003700|GO:0006355
Mepo5g01478 518 Gene3D AP2/ERF domain 228 296 IPR036955 GO:0003700|GO:0006355
Mepo5g01478 518 Gene3D AP2/ERF domain 330 390 IPR036955 GO:0003700|GO:0006355
Mepo5g01478 518 MobiDBLite consensus disorder prediction 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01478 Mepo-Chr5 15457825 15462801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01478 73 518 AP2-EREBP Transcription Factor Family AT5G10510 56.381 7.65e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mepo5g01478 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01478 K09285 - gmx:100775390 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01478 5 15457825 15462801 Mepo1g02469 1 25750902 25757300 PCT