Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01434 ATGGGAAGAGGGAAGATTGTGATTCGACGGATCGACAACTGTACAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGTTAGCAATCCTATGTGATGCACAAGTTGGACTTGTTATATTTTCCAGCACTGGAAAGCTTTATGAATATGCAAATACCAGCATGAAATCAGTGATTGAGAGATATAACATTTGCAAGGAAGACCAACAAGTGACGAATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGGCAGACATTTTAAGGCAGCAACTACAAAGTCTACAAGAAAACCATAGGCAATTGATGGGAGAACAGCTTTATGGTTTGAGTATAAGAAACCTACAAGACCTAGAGAGTCAACTGGAACTTAGCCTCCAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGAAAGGGAAACATAATCCATCAGGAAAATGTGGAGCTCTATAAGAAGGTAAACCTCCTTCAACAAGAAAACACACAACTACACAAAAAGGTGTATGGCACGACAGATAATGAGGCAACCGCAACAAGCAAAAACGCATTTGTTCAATTTCCATATGGTGTTCGTGGAGGAGGAGAATATCCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCAAGAATATTGTGAGACCTCAGGCAGTGCAAGTGCAACAAAATGA 720 0.4069 MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANTSMKSVIERYNICKEDQQVTNPESEVKFWQREADILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGNIIHQENVELYKKVNLLQQENTQLHKKVYGTTDNEATATSKNAFVQFPYGVRGGGEYPQTLFQLQLCQPEQEYCETSGSASATK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01434 239 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo5g01434 239 Pfam K-box region 80 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo5g01434 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Mepo5g01434 239 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Mepo5g01434 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g01434 239 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mepo5g01434 239 Coils Coil 85 112 - -
Mepo5g01434 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01434 Mepo-Chr5 15041407 15052972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01434 1 235 MADS-box Gene Family AT2G22630 58.051 1.52e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo5g01434 K-box 7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01434 K09264 - gmx:100795778 333.569