LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo5g01428	ATGATGGAGCTACAAGTTACTAGGATATTTAGATTGGTTGTGGCATGTGTTCTATGTTTGTGTATATTTATCAGATCAGCTTCTTCTGCAACTAAAGGGTTTGAGAGCATAGCATGTTGTGCTGATTCAAATTACACAGATCCAAAAACCACCCTAACTTACACAACAGATCACATCTGGTTCTCTGATAAAAGAAGTTGCAGACAAATACCCGAAATTTTGTTTAGCCACAGAAGCAATAGAAATTATCGAATATTTGAAATAGATGAAGGAAAGAGATGTTATAATTTGCCAACAATTAAGGATCAAGTATATTTGATAAGGGGCACATTTCCCTTTGATAGTTTAAATTCTTCGTTTTATGTTTCGATCGGGGTAACAGAACTAGGTGAATTGAGATCGTCTAGGCTCGAAGACTTGGAAATTGAGGGAGTTTTTAGAGCCACCAAAGACTACATAGATTTCTGCTTATTGAAGGAGGATGTCAATCCCTTCATTTCTCAGATTGAATTGAGGCCATTATCTGAAGAATACCTACATGGCTTTGCTACTAGTGTTTTAAAACTGATAAGCAGAAATAATCTTGGGGACACAAATGATGATATAAGGTTCCCAGATGACCAAAATGATAGAATCTGGAAATGGAAAGCAACTTCAACTCCATCATCTGCCCTTCCACTGTCTTCCAATGTCAGCAATGTTGACCTCAAAGACAGTGTCACACTCACACCTCCTCTACAAGTTCTGCAAACAGCTCTTACTCACCCTGATCGACTGGTGTTCGTCCACGACGGCCTCGAGACCGATGATTATGAATACTCCGTGTTTCTCTACTTTCTTGAATTAGATGACACTGTCAAAGCAGGACAAAGGGTGTTTGACATCTATCTAAACAATGAGATTAAAAAGGAGAAGTTTGATGTATTGGCTGGAGGGTCCAAGAACAGTTACACTGTCTTGAACATTTCAGCAAATGGATCACTCAATATAACCTTAGTCATGGCATCTGGATCTAAGTTTGGACCCCTTTTGAATGCCTATGAGATCCTGCAGGCACGGTCGTGGATTGAAGAGACCAGCCAAACAGATGTGGAAGTTATTCAGAAGATGAGAGAAGAACTGCTGCTGCAAAACCAAGAAAATGAAGCATTGGAGAGTTGGAGTGGAGACCCTTGTATGCTTTTCCCCTGGAAAGGAATAACATGTGATGATTCAAACGGTTCATCTATTATCACTAAGCTGGAACTTTCTTCCAACAATCTCAAAGGAGCAATTCCTTCTACTGTCACTGAGATGACCAACTTACAAATACTGAATCTGAGCCACAACCATTTCGATGGTTATATCCCCTCGTTTCCACCGTCCTCCTTGCTGATATCAGTGGATCTGAGCTACAATGATCTTACGGGACAGCTTCCAGAATCCATTATCTCACTGCCACATTTAAAATCATTATATTTTGGGTGCAATCAACACATGAGTGACGAAGATACAGCAAAGTTGAACAGTTCCCTAATCAATACAGATTATGGGAGATGCAAAGCAAAAAAACCGAAGTTTGGACAAGTATTCGTGATTGGAGCTATTACAAGTGGATCACTTTTGATTACTTTGGCTGTTGGAATTCTATTTTTTTGTCGTTATAGACACAAGTCAATTACTTTGGAAGGATTTGGAAAGACCTACCCAATGGCAACAAATATAATTTTCTCTTTGCCAAGCAAAGATGATTTCTTCATAAAGTCTGTATCAGTTAAACCGTTCACTTTGGAGTATATAGAGCAGGCTACAGAACAGTACAAAACTTTAATAGGTGAAGGAGGATTTGGCTCTGTTTACAGGGGCACTCTAGACGATGGTCAAGAAGTGGCAGTGAAAGTGCGGTCATCCACATCAACTCAGGGAACCAGGGAATTTGATAACGAGCTAAACCTACTTTCAGCTATACAACATGAGAACCTGGTGCCTCTTCTGGGTTACTGTAATGAGTATGATCAACAAATTCTCGTGTATCCTTTCATGTCCAATGGCTCTTTGCTAGATAGACTATACGGGGAAGCATCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTCGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCAGGACGTTCTGTAATACACAGGGACGTAAAATCGAGCAATATACTGCTGGATCAGAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTCTCAAAATACGCCCCTCAGGAAGGAGACAGTTATGTTTCCCTAGAAGTAAGAGGAACTGCAGGCTATCTGGATCCTGAGTACTACAAAACCCAGCAATTATCTGAAAAAAGTGATGTTTTCAGCTTTGGTGTGGTTCTACTTGAAATCGTAAGCGGACGGGAACCTCTCAACATAAAGAGACCACGGATCGAGTGGAGCTTGGTTGAATGGGCTAAACCATACATAAGAGCATCAAAGGTGGATGAAATTGTAGATCCTGGCATCAAGGGAGGATATCATGCAGAAGCATTATGGAGAGTTGTGGAAGTAGCACTACAATGTCTAGAACCCTACTCAACATATAGGCCATGCATGGTTGATATTGTCCGCGAGTTGGAGGATGCTCTCATTATTGAAAACAATGCATCTGAATACATGAAATCCATAGACAGCCTTGGAGGATCCAACCGCTACTCAATTGTTATGGACAAACGGGCGCTGCCTTCAACTACATCAACAGCAGAATCAACTATCACAACCCAAACCTTGTCACACCCTCAACCGAGATAG	2784	0.4084	MMELQVTRIFRLVVACVLCLCIFIRSASSATKGFESIACCADSNYTDPKTTLTYTTDHIWFSDKRSCRQIPEILFSHRSNRNYRIFEIDEGKRCYNLPTIKDQVYLIRGTFPFDSLNSSFYVSIGVTELGELRSSRLEDLEIEGVFRATKDYIDFCLLKEDVNPFISQIELRPLSEEYLHGFATSVLKLISRNNLGDTNDDIRFPDDQNDRIWKWKATSTPSSALPLSSNVSNVDLKDSVTLTPPLQVLQTALTHPDRLVFVHDGLETDDYEYSVFLYFLELDDTVKAGQRVFDIYLNNEIKKEKFDVLAGGSKNSYTVLNISANGSLNITLVMASGSKFGPLLNAYEILQARSWIEETSQTDVEVIQKMREELLLQNQENEALESWSGDPCMLFPWKGITCDDSNGSSIITKLELSSNNLKGAIPSTVTEMTNLQILNLSHNHFDGYIPSFPPSSLLISVDLSYNDLTGQLPESIISLPHLKSLYFGCNQHMSDEDTAKLNSSLINTDYGRCKAKKPKFGQVFVIGAITSGSLLITLAVGILFFCRYRHKSITLEGFGKTYPMATNIIFSLPSKDDFFIKSVSVKPFTLEYIEQATEQYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTAESTITTQTLSHPQPR	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo5g01428	927	Pfam	Protein tyrosine and serine/threonine kinase	601	870	IPR001245	GO:0004672\|GO:0006468
	Mepo5g01428	927	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	720	732	IPR008271	GO:0004672\|GO:0006468
	Mepo5g01428	927	PANTHER	OS07G0107800 PROTEIN-RELATED	36	874	-	-
	Mepo5g01428	927	Gene3D	Phosphorylase Kinase; domain 1	571	673	-	-
	Mepo5g01428	927	FunFam	Nodulation receptor kinase	567	673	-	-
	Mepo5g01428	927	SUPERFAMILY	Protein kinase-like (PK-like)	578	870	IPR011009	-
	Mepo5g01428	927	Pfam	Leucine rich repeat N-terminal domain	361	403	IPR013210	-
	Mepo5g01428	927	SMART	serkin_6	598	875	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo5g01428	927	FunFam	Leucine-rich repeat receptor-like kinase	363	496	-	-
	Mepo5g01428	927	Gene3D	Transferase(Phosphotransferase) domain 1	674	890	-	-
	Mepo5g01428	927	Gene3D	-	188	354	-	-
	Mepo5g01428	927	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	674	890	-	-
	Mepo5g01428	927	ProSiteProfiles	Protein kinase domain profile.	598	875	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo5g01428	927	ProSitePatterns	Protein kinases ATP-binding region signature.	604	626	IPR017441	GO:0005524
	Mepo5g01428	927	Pfam	Malectin-like domain	41	350	IPR024788	-
	Mepo5g01428	927	CDD	STKc_IRAK	604	871	-	-
	Mepo5g01428	927	SUPERFAMILY	L domain-like	383	494	-	-
	Mepo5g01428	927	FunFam	Nodulation receptor kinase	188	354	-	-
	Mepo5g01428	927	Gene3D	Ribonuclease Inhibitor	360	514	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo5g01428	Mepo-Chr5	14993364	15000535	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo5g01428	12	877	Receptor kinase-like Gene Family	AT1G67720	34.365	1.90e-141	442

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Mepo5g01428		Malectin_like	8.3e-46	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo5g01428	-		-	gmx:100781986	1439.86