Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01422 ATGGAACTTTCTCAACTTGGTTTTCTTGAGGAGCTATTAGCTCCAAGAAAAGACACATGGAATACTTTATCCACTGGTTTGAATGAGTTACTACTCCCTAATGGTTGGACCTTTGACTCATTTGATGAAAATCTTCTCATCAATCCATCTTTAAACCCTTCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACCGATGCATCATCATTATCATACCCTTATCTTGATGGATTCTCAGTTCCAGAGTTTGATGATACAACACCAGTTTTACCACAACAAGAAAGTATTGAAGAGTTTGGATTTGTTGGAAGTGAGAACAAGAGGTTTGAAGAGAGTAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAGACTCCAGTTTTTAACATGGGTTTGTGTGGAGAGAAAAAAGCCAAATCCAAAAGGGTTGAAGGACAGCCTTCAAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGACAGGCTCTCCATGCTTAGGTCAATTGTCCCTAAGATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAGTAAGTTACAAGAAGAAATGGAGGAAGAAGGAACAAATCAGATAAACCTTTTAGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCTAAGTTTGATGTTGAGAGGAGAGACCAGGACACAAGAGTCAGCATCTGCTGTGCCACAAAGCCAGGATTGTTACTGTCAACAGTGAACACATTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTTAGTAAATTGTATTACTGCATGTTCGGATTGATAGCGAATTTGGCAGAATTACATTGTCTCACCGTCATTTTACTAAAAACTAAGCTTTTGAGCTTTAAGGGGTATAATTGA 1005 0.3791 MELSQLGFLEELLAPRKDTWNTLSTGLNELLLPNGWTFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDASSLSYPYLDGFSVPEFDDTTPVLPQQESIEEFGFVGSENKRFEESKISCKVEEQVSETPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEMEEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRVSICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVSKLYYCMFGLIANLAELHCLTVILLKTKLLSFKGYN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01422 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Mepo5g01422 334 Gene3D - 142 217 IPR036638 GO:0046983
Mepo5g01422 334 Coils Coil 195 218 - -
Mepo5g01422 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 112 299 - -
Mepo5g01422 334 SMART finulus 158 207 IPR011598 GO:0046983
Mepo5g01422 334 CDD ACT_UUR-ACR-like 251 292 - -
Mepo5g01422 334 Pfam Helix-loop-helix DNA-binding domain 158 201 IPR011598 GO:0046983
Mepo5g01422 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 217 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01422 Mepo-Chr5 14870331 14871928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01422 11 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.938 3.38e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g01422 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01422 - - gmx:100806571 478.789