Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01412 ATGTCTCCGACAGCGGTGGTTACGGAGGAGGAAGGGCGGCGCGAACTGTCGTCGACTGTGGAACGGAATTACTTGGGATTGTCTGATTGTTCATCAGTGGACAGTTGTGATTCAACTCTCCCAAGTTTGTGTGATGAGAAAAAAGTGAACTTGAATTTGAAAGCTACCGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCGCCCGAGAGGGAAATGGATTCGGATTTTTACGTAACAAAGCTTGATGAGAAACCATTGTTCCCTTTGCTTCCTGCAAAAGATGGTTTGCAGAAGAATGTGGTTTCGGGGAATAAGAGAGGATTTGCTGATACCGTTGATGGGTTTTCACAGGGGAAGTTTAATGGTAATTCAGGGATTAACGTGATGCTATCGCCTAGACCTGTTGGAGCTCAGGCGAGCACAGTGAAAGAAATGCCGAGTAAGGTTTTGCAGGAAAGGCCTTGTGCAGCTAGAGGAACTACTGGTCATAATCATGCAGGTGCTGCTTCTGTCGCTGGTTGTGCACCGGCATCAAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACACGATGGCAACCACTTCCAAGAATAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTTGATCTAAGAATGTATACAACATATCAGCAACTATCGTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGCCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGTTGAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGACGTACCATGGGAGATGTTCGTCGATACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAGAAGTCCAAAAGCAGGAGTTAG 1008 0.4673 MSPTAVVTEEEGRRELSSTVERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPEREMDSDFYVTKLDEKPLFPLLPAKDGLQKNVVSGNKRGFADTVDGFSQGKFNGNSGINVMLSPRPVGAQASTVKEMPSKVLQERPCAARGTTGHNHAGAASVAGCAPASKAQVVGWPPIRSFRKNTMATTSKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRMYTTYQQLSSALEKMFSCFTLGQCGSHGAPGREMMSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFVDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01412 335 Pfam AUX/IAA family 56 326 IPR033389 -
Mepo5g01412 335 FunFam Auxin-responsive protein 210 327 - -
Mepo5g01412 335 SUPERFAMILY CAD & PB1 domains 213 316 - -
Mepo5g01412 335 Gene3D - 212 329 - -
Mepo5g01412 335 ProSiteProfiles PB1 domain profile. 215 319 IPR000270 GO:0005515
Mepo5g01412 335 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 51 322 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01412 Mepo-Chr5 14724331 14730074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01412 214 320 B3 DNA Binding Superfamily AT5G37020 31.776 2.09e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo5g01412 AUX_IAA 3.2e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01412 K14484 - gmx:547502 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01412 5 14724331 14730074 Mepo5g01412 5 14724331 14730074 ECH
Mepo5g01412 5 14724331 14730074 Mepo1g02509 1 26340274 26345775 PCT