Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01396 ATGAATCTTTGGAGCGACGATAACTCTTCAGTAATGGAGGCTTTCATGACCTCCTCTGATTTATCAACTTTATGGCCACCAGCACCACCGTCACAACCACCACAAACCACCACCGGATTCAACCAAGACACTCTCCAACAACGTCTTCAAGCTTTAATCGAAGGCGCAAAAGAAATCTGGACCTACGCTATTTTCTGGCAACCTTCTTATGACTATTCAGGTTCTTCGTTACTTGGTTGGGGTGACGGTTACTATAAAGGCGAAGAAGACAAAACAAAAGCGAAGAAATCAAAAGTTACTTCACCTGCTGAACAAGAACACCGAAGAAAAGTTCTCAGAGAACTTAATTCATTAATCTCCGGTAATCCTGTTACGGATGAATCTCCTGTTGATGAAGAAGTTACTGATACGGAGTGGTTCTTTTTAGTTTCTATGACGCAGTCTTTTGTCAACGGAACTGGACTGCCTGGACAAGCTTATTATAATTCAGCTCCGGTTTGGTTAACTGGAGCTGAAAATCTCGCCCTCTCAGCTTGTGAGAGGGCGAGACAAGGTCAAGAACATGGTATACAGACGCTGGCGTGTATACCTTCGGCTGACGGTGTTTTGGAGCTTGGATCTACTGAGTTGATTTATCAGAATAATGATTTGATGAATAAAGTGAAGATGCTTTTCAATTTTAACAATAATTTTGATTTTGGATCTTCGTGGCAGTTAGGTGGTAATAATTCTGCTGCTACAATTGGTGGTAATCAAGGTGAGAATGATCCTTCTTTGAATTGGATCAACGATCCTGAAGCTCGAGATTCTGTTGATAATAATTCTCTTGCTGCAACAACAGCAACAACCACAAACACTTCAATTTCAATTCCAAGTCACCAACATCACAACAATAATCAGAATTTGAGTGTTAGTGTGACGAAGACGATGCAATTTGAAACTCATGGTTCAAGTACTTTAACGGAGGTTCCTAGAGTTGTTCATGGTTCAAGCAAGCAAAATAATCAAAGTTTCTTTTCTAAGGAAATGAATCTTTCTGATTATGGCGGGGGTAACAATCAGCAACGTTTGTTGAAGCCGGAATCTGGTGAGATTTTGTGTTTTGGTGAGAGTAAAAAGAGTTCTTATGTTACTAATAATGGAAACTCGAATTCGAATTTTTTCTCTGGTCAATCACAGTTAGTTTCAGTTGCTGAGGAGAATAACAATGGGAACGGGAATGGGAATGGAAATGGAAAGAGGAGATCACCGAATTCGAGAGGAAGCAATAATGATGATGGAATGCTATCTTTTACTTCTGGTGTAATTGTTCCACCAGCTACGTCAAATTTGAAATTCTCCGGTGGTACTGGTGGTGTTGATTCGGACCATTCGGATCTGGAGGCTTCAGTGGTGAAGGAGGTGGATAGTAGTCGTGTGGTGGAGCCCGAAAAGAAGCCGAGGAAGAGAGGGAGGAAGCCGGCAAACGGAAGAGAGGAACCGTTGAATCATGTTGAAGCTGAGAGGCAAAGAAGAGAGAAGCTGAATCAGAGATTCTATGCACTTCGAGCGGTTGTTCCTAATGTTTCAAAGATGGATAAAGCTTCACTTTTGGGTGATGCTATATCTTATATTACTGAGTTGAAAACAAAGCTTCAGAAAACTGAATCTGATAAAGATGGATTAGAAAAGCAACTTGATGCGATGAAGAATGAGATTCAGAAAATCAATGAAAACCCATCTCATCAGCCACCACAACAGCAGCAGCAACAACAGCCAGTACCAAATAAACCCTCTTCAAATCAAGCTCTAATCGATTTAGATATCGACGTGAAGATTATAGGTTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCTGCAGCGAGGTTAATGGCAGCGTTAATGGAGCTTGACCTAGAAGTGCACCATGCCAGTGTGTCTGTGGTAAATGATCTGATGATACAACAAGCAACCGTGAAAATGGGGAGTCGTTTTTACACTCAGGAGCAGCTTCGAGCGGCATTGTCCTCTAAAGTCGGGGATGTTCAATAA 2043 0.4156 MNLWSDDNSSVMEAFMTSSDLSTLWPPAPPSQPPQTTTGFNQDTLQQRLQALIEGAKEIWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKTKAKKSKVTSPAEQEHRRKVLRELNSLISGNPVTDESPVDEEVTDTEWFFLVSMTQSFVNGTGLPGQAYYNSAPVWLTGAENLALSACERARQGQEHGIQTLACIPSADGVLELGSTELIYQNNDLMNKVKMLFNFNNNFDFGSSWQLGGNNSAATIGGNQGENDPSLNWINDPEARDSVDNNSLAATTATTTNTSISIPSHQHHNNNQNLSVSVTKTMQFETHGSSTLTEVPRVVHGSSKQNNQSFFSKEMNLSDYGGGNNQQRLLKPESGEILCFGESKKSSYVTNNGNSNSNFFSGQSQLVSVAEENNNGNGNGNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPATSNLKFSGGTGGVDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESDKDGLEKQLDAMKNEIQKINENPSHQPPQQQQQQQPVPNKPSSNQALIDLDIDVKIIGWDAMIRVQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01396 680 MobiDBLite consensus disorder prediction 462 502 - -
Mepo5g01396 680 MobiDBLite consensus disorder prediction 244 259 - -
Mepo5g01396 680 FunFam Transcription factor bHLH13 485 559 - -
Mepo5g01396 680 MobiDBLite consensus disorder prediction 331 356 - -
Mepo5g01396 680 MobiDBLite consensus disorder prediction 244 265 - -
Mepo5g01396 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 492 541 IPR011598 GO:0046983
Mepo5g01396 680 MobiDBLite consensus disorder prediction 399 434 - -
Mepo5g01396 680 SMART finulus 498 547 IPR011598 GO:0046983
Mepo5g01396 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 495 561 IPR036638 GO:0046983
Mepo5g01396 680 PANTHER MYC 12 675 IPR045084 GO:0003700|GO:0006355
Mepo5g01396 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 225 IPR025610 -
Mepo5g01396 680 MobiDBLite consensus disorder prediction 570 594 - -
Mepo5g01396 680 CDD bHLH_AtAIB_like 489 565 - -
Mepo5g01396 680 Coils Coil 538 572 - -
Mepo5g01396 680 Gene3D - 484 573 IPR036638 GO:0046983
Mepo5g01396 680 Pfam Helix-loop-helix DNA-binding domain 496 541 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01396 Mepo-Chr5 14515475 14518029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01396 1 677 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.831 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g01396 bHLH-MYC_N 2.2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01396 K13422 - gmx:100776289 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01396 5 14515475 14518029 Mepo5g01396 5 14515475 14518029 ECH