Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01382 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAATAACAAAGATTGTTCTCAAGGTTTTTGTAGCGTCTATTGTCCACAATGGTGCTATGTAATCTACCCTCCACCTTCTCCTTCTCCCTTTGAATTCCCTGATGAAGATTCAAGTCCAAATTTCTCTCCTCTTGTCATTGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTAACTTACTACACCATAATATCGAAGTACTGTGGTCGTAGAGAATCATCGGTAAGTGAATCGCGTGAAGCAAACGATGAATTTGAAGACAATCACCATCATCATCATAACCCTTCAATCCATGAACCATGGCATGTTTCAACAAATGGATTAGATGAAACTTTGATTAAATCCATAACAGTTTGCAAATACAAAAAGAATGATGGATTGGTTGATGTAACAGATTGTTCAGTTTGTCTAAATGAGTTTCAAGATGATGAAAGTATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCATTCTAATTGTCCTCTTTGTCGCGCTACCATATTCGCCTTCAATGCTTCAAGTTCAAGTGCTGCAACACTTCATCTGCCAGCTCCTGTTATAGAAAATCCTTCGAGGAATGAAGTTTCTTTAGAAACTCAACATTTGAACGAAATTGTAGATGTTGAAAGAGACAATGAATTGGATGTGGTGGAAGAAGTTCCTATTCCAAAGACTGAATTTCGCGCTTTAAGCGATTTAGGAAATTTAAGAGGAAGGCATAGTGTGATTGAGATTAGAGATCATAATGAAGATTATCGTGAATCAATTCGAAGATCGTTTTCTATGGATCATTCATTTCAAAGTGGTGTTTTAGTTGTTGATGATGTTAATGCTATGCATATGAATCAAGAACAAGATTGTTCTCAAGGTGAAGGTTCATCAAAGAGGTTAAGAGGTGAAAGTGAAAGTGAAAGTAGTAAGTGTAGTTATAGAAGAAAGGTTTTGCATTGTGTTTTAAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAACAGAAGTGGCAGAGGAAGGCTTGGAGTTTTGCCACTCTAA 1125 0.3636 MASLGNPKAWVPYMNNKDCSQGFCSVYCPQWCYVIYPPPSPSPFEFPDEDSSPNFSPLVIAIIGILASAFLLVTYYTIISKYCGRRESSVSESREANDEFEDNHHHHHNPSIHEPWHVSTNGLDETLIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSSAATLHLPAPVIENPSRNEVSLETQHLNEIVDVERDNELDVVEEVPIPKTEFRALSDLGNLRGRHSVIEIRDHNEDYRESIRRSFSMDHSFQSGVLVVDDVNAMHMNQEQDCSQGEGSSKRLRGESESESSKCSYRRKVLHCVLSPIAMKRSFSSGRFFLNRSGRGRLGVLPL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01382 374 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Mepo5g01382 374 Pfam Ring finger domain 147 190 IPR001841 -
Mepo5g01382 374 SMART ring_2 148 189 IPR001841 -
Mepo5g01382 374 MobiDBLite consensus disorder prediction 93 113 - -
Mepo5g01382 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Mepo5g01382 374 FunFam RING-H2 finger protein ATL54 123 196 - -
Mepo5g01382 374 CDD RING-H2_EL5-like 147 190 - -
Mepo5g01382 374 PANTHER RING-H2 FINGER PROTEIN ATL16 44 329 IPR044600 GO:0016567|GO:0016740
Mepo5g01382 374 MobiDBLite consensus disorder prediction 93 117 - -
Mepo5g01382 374 MobiDBLite consensus disorder prediction 310 329 - -
Mepo5g01382 374 SUPERFAMILY RING/U-box 128 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01382 Mepo-Chr5 14324368 14325668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01382 6 374 C3H Transcription Factor Family AT5G17600 41.667 4.54e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01382 - - gmx:100792267 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01382 5 14324368 14325668 Mepo5g01382 5 14324368 14325668 ECH
Mepo5g01382 5 14324368 14325668 Mepo1g02536 1 26743717 26745565 PCT