Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01369 ATGAATGGGAGATATCACCGCAACAAATCACAACAACAACATCGTACCAAATCGAAACTTCGCTACGTTAACAAATCCGAACTTATTGTTTCTTCACCTAACTCTGTGGCGGTTGTAGAGCCAGTTTCCTCTGAGGATGTTATTGTCAACAACAACACCGTTGATGACGTGGCCAGTTCAAGCAAGACCAAGGAAGAAGATGATTATGATAATGGTATGGATAATACTAATAATCTTGATAAGTTGCTTACTGATATTCAACAAATTGAATTATCCGAGGAAGAGATCACAATCAATGATCAATTGCAACAAGACGAGTTACTTGTGGTGGAATCAATTTATGGAGAAAACGTTTTCAGCCTTGATACATGGAAAGGCCTGCGTTGTTTTCAGATACACATAAACATTGATGTTTTGGGTGAAATAGGCATTACTGCGAAGGTTAACTCTGTTAATGAACTTGAGACATTAAGCAACATTTCAGACGACTTCTTATACTCTTTCAAAGTTCAATATCTTCCACCGATTGTTTTGACATGTTTATTACCTAAGTCGTATCCGAGTCACCAACCGCCTATATTTACAATCTCTGTTAAGTGGCTGGAATCTGCGAAGATTTTAAGTTTATGTTCCAAGTTGGATTCAATATGGACAGAACAACAAGGGCAGGAAGTGATTTACAGTTGGGTAGAATGGTTACAAAATTCTTCTCTTTCTCATTTGGGATTTGATGAGGAGATTAGATTAGGTCCTTATGGTGTGAATCGTGTTGCGGATGCACGTGTGGTTTCGGGAATTGGATGCATTGATGCTGATATTCCTTTTTTACAAAGCTACAACAATGAGAGACTCCATCAAAACTTCCTTAAAGAATTGCATGAATGTTGTGTTTGCTATAGTGAATATCCAGGTACCGAATTCGTCCGGTTACCATGCAAACATTTTTTTTGCCGCAAATGCTTACAGACCTTTACACAGATACATGTAAAGGAAGGAAACGTTAGTAATCTTCAATGTCTTGATGCAAAATGCAAGGAGATGATTCCACCAGGACTTTTAAAACACTTTCTTGGCGATGAGGAATACGAACGTTGGGAATCTATGATGTTAGAGAAAACACTTGCATCAATGTCTGATGTTGCTTATTGCCCGAGATGTGAAACGCCCTGTATAGAGGAGGAAGACCAACATGCTCAGTGCCCAAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGGGAACGCCGCCATGTTGGCATTGCATGCATGACCCTTGAAATGAAGCTTCAGCTTCTTCAGGATCGTCAAAATTCATCTCGTTTAAAGGTGAATCAAAGGCAAATTGAACTTGCAAAGATCAATGAAATGCTCAGTATCAAAGCAATTCACCGTGATTCCAAGTTGTGCCCTTTTTGTGATATGGCGATTTCTCGAACTGAAGGTTGTAACAAAATGAAGTGCGGTAATTGTGGAAAGTTCTTCTGTTACCTCTGCAACAAAGCACTTGACTCATCAAATCCATATGGACATTACAGGGAAGGGGGGTCGTGTGAATTGTTCCCACGAGAAATGGTTGACAATTGGCAAGCACGAATAAATCCTCGCCAGGAAGTACAACAAATACATGCTGAACTCTTTCACCTTGGTGGCTCAGATTGTCCTAGTTGTCGCCAATTTAATGTAAAGGTATGTAAAGTTTTCTGTTTGTTTCCTAAAAAAGAAATATGA 1725 0.3919 MNGRYHRNKSQQQHRTKSKLRYVNKSELIVSSPNSVAVVEPVSSEDVIVNNNTVDDVASSSKTKEEDDYDNGMDNTNNLDKLLTDIQQIELSEEEITINDQLQQDELLVVESIYGENVFSLDTWKGLRCFQIHINIDVLGEIGITAKVNSVNELETLSNISDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSKLDSIWTEQQGQEVIYSWVEWLQNSSLSHLGFDEEIRLGPYGVNRVADARVVSGIGCIDADIPFLQSYNNERLHQNFLKELHECCVCYSEYPGTEFVRLPCKHFFCRKCLQTFTQIHVKEGNVSNLQCLDAKCKEMIPPGLLKHFLGDEEYERWESMMLEKTLASMSDVAYCPRCETPCIEEEDQHAQCPKCFFSFCTLCRERRHVGIACMTLEMKLQLLQDRQNSSRLKVNQRQIELAKINEMLSIKAIHRDSKLCPFCDMAISRTEGCNKMKCGNCGKFFCYLCNKALDSSNPYGHYREGGSCELFPREMVDNWQARINPRQEVQQIHAELFHLGGSDCPSCRQFNVKVCKVFCLFPKKEI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01369 574 CDD RING-HC_ITT1-like 289 348 - -
Mepo5g01369 574 Pfam RWD domain 101 236 IPR006575 GO:0005515
Mepo5g01369 574 Pfam IBR domain, a half RING-finger domain 458 501 IPR002867 GO:0008270
Mepo5g01369 574 Pfam IBR domain, a half RING-finger domain 363 421 IPR002867 GO:0008270
Mepo5g01369 574 ProSiteProfiles Zinc finger RING-type profile. 295 339 IPR001841 -
Mepo5g01369 574 MobiDBLite consensus disorder prediction 53 76 - -
Mepo5g01369 574 SUPERFAMILY UBC-like 101 244 IPR016135 -
Mepo5g01369 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 378 IPR013083 -
Mepo5g01369 574 SUPERFAMILY RING/U-box 363 426 - -
Mepo5g01369 574 Gene3D Ubiquitin Conjugating Enzyme 91 242 IPR016135 -
Mepo5g01369 574 Gene3D - 436 547 - -
Mepo5g01369 574 ProSitePatterns Zinc finger RING-type signature. 312 321 IPR017907 -
Mepo5g01369 574 FunFam RBR-type E3 ubiquitin transferase 436 546 - -
Mepo5g01369 574 SMART ibrneu5 363 421 IPR002867 GO:0008270
Mepo5g01369 574 SMART ibrneu5 450 516 IPR002867 GO:0008270
Mepo5g01369 574 CDD Rcat_RBR_RNF14 453 519 IPR047548 GO:0008270
Mepo5g01369 574 CDD BRcat_RBR_RNF14 374 425 - -
Mepo5g01369 574 ProSiteProfiles TRIAD supradomain profile. 291 520 IPR044066 -
Mepo5g01369 574 SMART ring_2 468 555 IPR001841 -
Mepo5g01369 574 SMART ring_2 295 386 IPR001841 -
Mepo5g01369 574 FunFam RBR-type E3 ubiquitin transferase 290 374 - -
Mepo5g01369 574 ProSiteProfiles RWD domain profile. 105 240 IPR006575 GO:0005515
Mepo5g01369 574 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 135 533 IPR031127 GO:0004842|GO:0016567
Mepo5g01369 574 SMART RWD2001b 105 240 IPR006575 GO:0005515
Mepo5g01369 574 SUPERFAMILY RING/U-box 290 374 - -
Mepo5g01369 574 SUPERFAMILY RING/U-box 455 511 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01369 290 524 ARIADNE family AT3G27710 24.380 1.57e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01369 K11971 - gmx:100500662 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01369 5 14188592 14193574 Mepo5g01369 5 14188592 14193574 ECH