Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01350 ATGTATGGTGATTGTCAAGTTATGTCAACAATGGGAGGGAATGTAGTAGTAAACTCAGAATCTCTCTTCTCTTCACCGATCCATAACTCTAACTTCAACTTCATGTCAACCATGCCTTTTCAACCCTTTCCTTCTTCCATGAAAGAAGAAGAAGGAATTTTGAGAGGTAAAGAAGAGATAATGGATCAAAGTGGTTCAGGTAGTGAACAAGTTGAAGATAAGTCAGGAAATGAACAAGAGATTAATAATGAACAACAAGCTACAAAGAAGAAACGTTATCATCGACACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGACTGAAACTAAGCCATGATTTGGGACTGAAACCACGCCAGGTTAAGTTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCTGATAATGTGATACTTAGAGCAGAGAATGAGAGTTTGAAGAATGAGAACTATAGGCTACAATCGGCGTTACGTAATATTTTATGTCCTAATTGTGGTGGGCCATGTATAATGGGCCCTGATATGGGCTTTGATGATCATCAACTTCGATTTGAAAATGCCCGGTTAAAAGAAGAGCTAGAACGTGTGTGCTGTATAACATCAAGATACACTGGTCGTCAACTCCAAACAATGGCACCACCTTCATCTCTTATGCCACCATCACTAGATTTGGACATGAACATTTATCCAAGGCACTTTGATCCAATGCCACCATGCACAGAAATGATTCCTGTCCCTATGTTACCACCTGAACCTTCACATTTTCAAGAGGGTGGTCTCTTATTAATGGAAGATGAAAAATCACTTGCTATGGAACTTGCAGCTTCTTCTATGGCTGAGCTTGTTAAGATGTGTCAAATGAACGAACCGCTTTGGATTCGTAGTGGCGAGAATGATAGGGAAGTTCTTAATTTTGATGAGCATGCTAGGGTTTTTCAATGGCCTTTGAATCTTAAGCAAAGGAATGAGTTAAGGAATGAAGCTACACGTGATTCTGCTGTTGTTATCATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCAGGTGCTTCTGGCCATGCAAGTGGGACTCTTCAGCTGATGCACGCAGAATTCCAAGTTCTTTCTCCATTGGTATCCACCAGAGAGACTCATTTTCTTCGGTATTGTCAGCAAAATGCCGAGGAAGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTCCACCAAAACTTTCAGAACTCTTATCCCAAATACTGCAGGAGGTCCTCTGGTTGTGTGATTCAAGACATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTGTAGAGAAACCAGTGCATCAAATATTTAGTAACTATGTGTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCTGGAAGCGCGAAAGAGCTTGATGAAATTAGCAAATAGGATGATAAAAACTTTTAGCCTTAATATGACCACTTGTGGTGGACAATCATGGACTGCTATATCAGATTCACCAGAAGACACGGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAACCTAGTGGAGTGATTCTCGCCGCAGTTTCAACCACTTGGCTTCCTTATCCTCATACCAAAGTCTTTGATCTCCTTCGTGACGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGAAACTCATTAAATGAAGTGGCTCATATTGCTAACGGTTCACATCCGGGAAACTGCATTTCTCTTCTTCGCATAAATGTAGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTGCAAGAGAGTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACACGACAGTCGACGTTGATTCGGTCCAACTAGCTATGAGTGGACAAGACCCTTCATGCATTGCACTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTTTCATCAAATGCTGATACATCATCTGAACAAGGTGTCACTGCAACACCGTCATCTACTACAAGTGCCAATGCTTCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAATCACCTCTGCAATACCCTGCATCAAATTGAAGGTGTTCTTTGTAGCAGCACTAACAACAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACTAGTGCACCCTCCAAGTAG 2409 0.4143 MYGDCQVMSTMGGNVVVNSESLFSSPIHNSNFNFMSTMPFQPFPSSMKEEEGILRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQQATKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQSALRNILCPNCGGPCIMGPDMGFDDHQLRFENARLKEELERVCCITSRYTGRQLQTMAPPSSLMPPSLDLDMNIYPRHFDPMPPCTEMIPVPMLPPEPSHFQEGGLLLMEDEKSLAMELAASSMAELVKMCQMNEPLWIRSGENDREVLNFDEHARVFQWPLNLKQRNELRNEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFQNSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSLEARKSLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILAAVSTTWLPYPHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTVDVDSVQLAMSGQDPSCIALLPQGFMIVPMVSSNADTSSEQGVTATPSSTTSANASNSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGVLCSSTNNNCFVGSCNEPTTSAPSK 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01350 802 CDD START_ArGLABRA2_like 284 513 - -
Mepo5g01350 802 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Mepo5g01350 802 SUPERFAMILY Bet v1-like 542 776 - -
Mepo5g01350 802 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Mepo5g01350 802 ProSiteProfiles START domain profile. 280 517 IPR002913 GO:0008289
Mepo5g01350 802 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 778 IPR042160 -
Mepo5g01350 802 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Mepo5g01350 802 MobiDBLite consensus disorder prediction 73 88 - -
Mepo5g01350 802 Gene3D - 289 498 IPR023393 -
Mepo5g01350 802 SMART HOX_1 88 151 IPR001356 GO:0003677
Mepo5g01350 802 SUPERFAMILY Bet v1-like 282 516 - -
Mepo5g01350 802 CDD homeodomain 90 148 IPR001356 GO:0003677
Mepo5g01350 802 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Mepo5g01350 802 SMART START_1 289 514 IPR002913 GO:0008289
Mepo5g01350 802 MobiDBLite consensus disorder prediction 61 95 - -
Mepo5g01350 802 FunFam Homeobox-leucine zipper protein HDG1 75 163 - -
Mepo5g01350 802 Coils Coil 146 166 - -
Mepo5g01350 802 Gene3D - 74 158 - -
Mepo5g01350 802 Pfam START domain 290 514 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01350 Mepo-Chr5 13910117 13917290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01350 8 782 Homeobox Transcription Factor Family AT5G46880 55.276 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo5g01350 START 1.1e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01350 - - psat:127119778 1463.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01350 5 13910117 13917290 Mepo5g01350 5 13910117 13917290 ECH
Mepo5g01350 5 13910117 13917290 Mepo4g04272 4 52491318 52496759 ECH