Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01294 ATGGGTCGCAAAAACGACGCCGTTTTATCAACCGAACCAGAACAAACCCTTAACAACAACAACAACACCGAACTCAAATCCTCCAAGAAGAAAAACAAAAAGAACAAACACGAAGAAAACACTCCCAAGAGAAAACACGAAGACAACGAAACCAATCTTCAAAACGACGCCGAATCAGAGAAGAAAAGTAAGAAGAAGAAAAAGCACAACAAATCGGAGGAAAATGACAACGGCGGTGATGTGTCTGTTTCGGCGTCGGATGAACCGATTATGGTGACTGGAAAGAATGCCGGAGATGCGAAATACACGGCGGTGAAGAAGTTTGAGGATTCGGGGCTACCTGAAAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCTACTGGGTCAGGGAAGACACTTGCTTTTGGAATACCAGCTATTATGCATGTTATGAATAAGCGGAAGAGTAAGGGTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACGAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAACAACCACAAATCTCTGCACTAAAATCTGGCATTGATATCGTCATTGGAACTCCCGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTGGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAACCATGATGTCATGCAAATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAGTCTCAAAAGAATCGAGTACTGGTTTTTGTTTTGTACAAATGGGAAACCACGCGGGTGGAAAAAATGCTTCAACAAGGGGGTTGGAAAGCAGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTTTTCACACATCTGAATAAGGGACTTGCTGGGGAGCTTGTGAACGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCCAAGCTTTATGGGGCCCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGACGATGAAGACTAA 1581 0.4276 MGRKNDAVLSTEPEQTLNNNNNTELKSSKKKNKKNKHEENTPKRKHEDNETNLQNDAESEKKSKKKKKHNKSEENDNGGDVSVSASDEPIMVTGKNAGDAKYTAVKKFEDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTSKQPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01294 526 CDD DEADc 122 314 - -
Mepo5g01294 526 MobiDBLite consensus disorder prediction 9 25 - -
Mepo5g01294 526 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 485 - -
Mepo5g01294 526 Pfam DEAD/DEAH box helicase 129 298 IPR011545 GO:0003676|GO:0005524
Mepo5g01294 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 461 IPR027417 -
Mepo5g01294 526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 313 IPR014001 -
Mepo5g01294 526 Gene3D - 52 316 IPR027417 -
Mepo5g01294 526 Pfam Helicase conserved C-terminal domain 342 450 IPR001650 -
Mepo5g01294 526 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Mepo5g01294 526 Coils Coil 20 40 - -
Mepo5g01294 526 MobiDBLite consensus disorder prediction 1 88 - -
Mepo5g01294 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 489 IPR001650 -
Mepo5g01294 526 SMART helicmild6 369 450 IPR001650 -
Mepo5g01294 526 Coils Coil 43 63 - -
Mepo5g01294 526 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 132 IPR014014 GO:0003724
Mepo5g01294 526 SMART ultradead3 123 330 IPR014001 -
Mepo5g01294 526 FunFam ATP-dependent RNA helicase RhlB 316 493 - -
Mepo5g01294 526 CDD SF2_C_DEAD 327 459 - -
Mepo5g01294 526 Gene3D - 317 492 IPR027417 -
Mepo5g01294 526 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01294 Mepo-Chr5 13167481 13173739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01294 105 458 Eukaryotic Initiation Factors Gene Family AT3G19760 32.865 7.14e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01294 K14811 - gmx:100806057 794.653